DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRSV (Ribose-5-phosphate isomerase A OS=Streptococcus sanguinis (strain SK36) GN=rpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 84/199 (42.21%), Postives = 114/199 (57.29%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  LGIPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K ++ +VDESK+V  LG     +PVEVV Y     A++L   FE  G     R   DQ FVTD  N++IDL L      ++ A + +  + GVVEHG+F  M   VIVA + G+
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTSKQAEGLGIPLKSIDDVDQVDVTVDGADEVDSAFNGIKGGGGALLMEKVVAVPTKHYIWVVDESKMVEKLG--AFKLPVEVVQY----GAEQLFRRFERAGYKPAFREKDDQRFVTDMQNFIIDLDLGVIENSVEFAQE-LDHVVGVVEHGLFNQMVDKVIVAGKSGL 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNS3 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.076e-30
Identity = 81/195 (41.54%), Postives = 116/195 (59.49%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   ++ +G  L  G+L +IVG+ TS +    A  LGIPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V    ++F+V+VD +KLV  L    L +PVEV+P  W     RL+ +    G VA+LR  T    P VTD GN V+D+  +  I D      +I  L GV+E+G+F+++A  V+V
Sbjct:   32 STAALMIEGLGARLAAGQLRDIVGVTTSFQGEVLAAELGIPLRALNATDRIDLAIDGADEVDPSFQLIKGGGACHVQEKLVADRAERFIVVVDSTKLVRCLNLDFL-LPVEVLPGAWVQVQSRLKSM----GGVAELRMATRKAGPVVTDQGNLVLDVRFENGISDPIALERDINNLPGVLENGLFVNLADEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_TRIEI (Ribose-5-phosphate isomerase A OS=Trichodesmium erythraeum (strain IMS101) GN=rpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.935e-30
Identity = 80/195 (41.03%), Postives = 119/195 (61.03%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            ST  + +  +GELL++G+L +I GIPTS ++   A   G+PL+ LD    +D+AIDGADEVDP  NL+KG G +  REK+V    +KFVV+VD SKLV  LG + L +PVEV+P       + ++ L         ++  G  P VTD GN VID+      + G+L+ + +NI    GV+E+G+F+ +A  ++V
Sbjct:   35 STTAYMIQFLGELLQRGELKDIKGIPTSFQSTVLAKKYGVPLTTLDEVDYMDIAIDGADEVDPQKNLIKGGGAAHTREKIVDCLAEKFVVVVDSSKLVDKLGSTFL-LPVEVIPMAMNPVIRAIEKLGGQPEVRMGVKKAG--PIVTDQGNLVIDVKFDSIDNPGELEKSLNNI---PGVLENGLFVGVADVILV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACPL (Ribose-5-phosphate isomerase A OS=Lactobacillus plantarum GN=rpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.935e-30
Identity = 86/201 (42.79%), Postives = 114/201 (56.72%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC---GCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  VD +GE ++   L NIVG+ TS +T  QA +LGIP+  +D    +DL IDGADE+      VKG G +LL EK+V     K + IVDESK+V  LG  GL  PVEV+PY         Q +FE     G     R   D+   TD+ N +IDL++   I D    +++++ + GVVEHG+FLDM  TVIV    G
Sbjct:   30 STVKFMVDALGERVKNEHL-NIVGVSTSDRTAAQAKALGIPMKSVDEVDHLDLTIDGADEIADDFQGVKGGGAALLFEKIVAINSDKVMWIVDESKMVHQLGAFGL--PVEVIPY-------GSQHVFEKMAARGYNPVFRKVNDELVRTDSNNIIIDLHI-DPITDPHALAEDLIHMVGVVEHGLFLDMVNTVIVGHANG 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPI (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.354e-29
Identity = 85/199 (42.71%), Postives = 111/199 (55.78%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L   I D  V    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTSKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKIVATPSKEYIWVVDESKLVDKLG--AFKLPVEVVQY----GAEQIFRRFERAGYKPSFREKDGQRFVTDMQNFIIDLALDV-IEDPIVFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROM1 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL1A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.354e-29
Identity = 73/193 (37.82%), Postives = 110/193 (56.99%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   ++ +   ++ G++ ++VG+ TS +    A  LGIPL  L S   +DLAIDGADEVDP   L+KG G   ++EK+V    KKF+V+VD +KLV  L      +PVEV+P  WK   K L +L  +       +  G  P VTD GN ++DL  +  I   ++    I  + GV+E+G+F+++   V+V
Sbjct:   31 STAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSVSEIDLAIDGADEVDPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTKLVEKL-NLDFKLPVEVLPSAWKQVQKTLINLGGEGNLRMAQKKAG--PIVTDQGNLILDLTFRNGIDQPELLETQINNIPGVLENGLFVNLTDEVLV 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPX (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH8102) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29
Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  L  G+L +IVG+ TS +    A  L IPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +KLV  L   G  +PVEV+P  W+   ++L  L    G  A+LR    +  P VTD GN V+D+ +   I D       +  + GV+E+G+F+D+   V+V
Sbjct:   32 STAALMIKALGAKLASGELKDIVGVTTSFQGEVLAAELNIPLLSLNAVDRIDLAIDGADEVDPGFQLIKGGGACHVQEKLVAARADRFVVVVDSTKLVERL-NLGFLLPVEVLPGAWRQVQQQLAAL----GGKAELRMAQRKAGPVVTDQGNLVLDVTMNGGISDPAALESTVNNIPGVLENGLFVDLVDEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BARQU (Ribose-5-phosphate isomerase A OS=Bartonella quintana GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29
Identity = 73/196 (37.24%), Postives = 116/196 (59.18%), Query Frame = -2
Query:   19 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 600
            STA   +  +GE +  G    + G+ TS+ + +     G+P++ L+  P +DL IDGADE+ P M L+KG GG+L REK+V  A +  +VI DE+K+V  LG    A+P+EV P+    T + ++ + +D G   +  LR  G+ PF TD G+++ D +    I   ++ S+ +L + GVVEHG+F  +A+  IVA
Sbjct:   30 STANEFIRLLGERVADG--LRVTGVATSQYSEQLCRKFGVPVTTLEQMPELDLDIDGADEIGPEMTLIKGGGGALWREKIVAAASRAMLVIADETKVVKTLG--AFALPIEVNPFGMPATRRLIEKVADDLGLSGEIILRMNGENPFKTDGGHFIFDAFW-GCILQPRLLSEALLAIPGVVEHGLFWGLASRAIVA 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRZJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain JJA) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 84/200 (42.00%), Postives = 114/200 (57.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I+ + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QIIAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRRFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRSY (Ribose-5-phosphate isomerase A OS=Streptococcus suis (strain 05ZYH33) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 84/198 (42.42%), Postives = 112/198 (56.57%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA + V  IG  + +  L  I G+ TS  T E A SLGIPL ++D    VDL +DGADEVD   N +KG G +LL EK+V    K  + IVDESK+V  LG     +PVEVV Y     A+ L  LFE  G     R    +  +TD  N++IDL L++ I D    ++ + R  GVVEHG+F+ + + VIV +  G
Sbjct:   28 STAYYFVQEIGRRVAEEGL-QITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALLMEKVVAVNSKDCIWIVDESKMVQTLG--AFKLPVEVVQY----GAENLFRLFEKKGYRPSFRMRNGKKHITDMQNFIIDLDLRR-IEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEG 217          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STRSV4.652e-3042.21Ribose-5-phosphate isomerase A OS=Streptococcus sa... [more]
RPIA_SYNS36.076e-3041.54Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_TRIEI7.935e-3041.03Ribose-5-phosphate isomerase A OS=Trichodesmium er... [more]
RPIA_LACPL7.935e-3042.79Ribose-5-phosphate isomerase A OS=Lactobacillus pl... [more]
RPIA_STRPI1.354e-2942.71Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_PROM11.354e-2937.82Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_SYNPX2.309e-2939.49Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_BARQU2.309e-2937.24Ribose-5-phosphate isomerase A OS=Bartonella quint... [more]
RPIA_STRZJ3.015e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRSY3.015e-2942.42Ribose-5-phosphate isomerase A OS=Streptococcus su... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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