DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ANASP (Ribose-5-phosphate isomerase A OS=Anabaena sp. (strain PCC 7120) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 77/194 (39.69%), Postives = 117/194 (60.31%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNIL-RLAGVVEHGMFLDMATTVIV 600
            ST  + +  +G+ L+ G+LT+IVGIPTS ++   +   G+PL+ LD+   +D+AIDGADEVDP  NL+KG G +  REK+V     +F+V+VD  KLV  L GS  A+PVEV+P         ++ L         ++  G  P +TD GN+V+D  ++ D  D  V  + IL  + GV+E+G+F++ A  V+V
Sbjct:   35 STTAYTIQYLGDRLKSGELTDIVGIPTSFQSEVLSKQYGVPLTTLDAVDHIDIAIDGADEVDPHKNLIKGGGAAHTREKVVDYLANQFIVVVDSGKLVDRL-GSVFAVPVEVIPMAITPVTNAIKQLGGKPELRMGVKKAG--PVITDQGNFVLD--VRFDSIDDPVNLEKILNNIPGVLENGIFVNCADIVLV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRZT (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRZP (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain P1031) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRR6 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpiA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP7 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain 70585) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP4 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP2 (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PARUW (Ribose-5-phosphate isomerase A OS=Protochlamydia amoebophila (strain UWE25) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 71/201 (35.32%), Postives = 116/201 (57.71%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQP-FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVT 600
            ST  + ++ +G+  + G    I  I +S+++  QA  +GIP+ D D+   +DL IDGADE+DP   ++KG GG+LLREK++  A K+ +V++DE+KLV  LG   +A  + +      FT + +    +D G    LR   DQ  + TDNGNY+ D+   + I +     + +   AGV+E G+F ++A  VI+  + G+T
Sbjct:   36 STIAYFIEALGKRCQAG--LKITAIASSERSMRQARLVGIPIVDSDTILELDLTIDGADEIDPLKQMIKGGGGALLREKLIASASKEMIVVIDETKLVNKLGKFPVATEISI------FTFRHIVKKLKDHGYCGSLRVNQDQSLYRTDNGNYIFDICFPEPIDNPIFEHNRLKSFAGVLETGLFFNLAGRVIIGYQNGMT 228          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LISIN (Ribose-5-phosphate isomerase A OS=Listeria innocua GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 71/199 (35.68%), Postives = 119/199 (59.80%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR-TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  + ++++GE++++G   NI G+ TS +T +QA +LGIPL  L+    +D+ IDGADE++     +KG GG+LLREKMV  A  K + +V E KLV  LG     +P+EV+P+ W    K+++ + E+ G    LR  +  + + T+NGNY++D+ + +   + +   + +  + GV+EHG+FL     +I     G
Sbjct:   28 STVYYTIEKLGEMVQKG--LNITGVSTSIETEQQARTLGIPLKSLNDVTKIDVTIDGADEINQAFQGIKGGGGALLREKMVAQASSKNIWVVGEEKLVTELG--KFPLPLEVIPFGW----KQIKRMLENDGVETTLRKQSSGEIYETNNGNYILDI-INQTFTNPEAWHEKLAGIPGVLEHGLFLHYVDIIICGKASG 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACLS (Ribose-5-phosphate isomerase A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.774e-29
Identity = 80/200 (40.00%), Postives = 118/200 (59.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ +G  + + +L  I G+ TS  T EQA +LGIPL+ +D    VDL +DGADE+D  +N +KG G +LL EK+V    K ++ IVDESKL  +LG     +PVEV+    ++ +++L   FE        R   + +  +TD  +++IDL++ K     K+A D +  + GVVEHG+F DM   VIVA   GV
Sbjct:   28 STAAYFVEELGRRVAEEQL-EITGVTTSSVTSEQAKALGIPLASIDEVDYVDLTVDGADEIDSHLNGIKGGGAALLMEKIVATYSKDYIWIVDESKLSENLG--SFKVPVEVI----RYGSEQLFKEFERAAYAPTWRLNEEGEKLITDMQHFIIDLHIAKIENPQKLA-DELDLMVGVVEHGLFNDMVKKVIVAGSDGV 219          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_ANASP6.718e-2939.69Ribose-5-phosphate isomerase A OS=Anabaena sp. (st... [more]
RPIA_STRZT8.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRZP8.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRR68.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP78.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP48.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_STRP28.774e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_PARUW8.774e-2935.32Ribose-5-phosphate isomerase A OS=Protochlamydia a... [more]
RPIA_LISIN8.774e-2935.68Ribose-5-phosphate isomerase A OS=Listeria innocua... [more]
RPIA_LACLS8.774e-2940.00Ribose-5-phosphate isomerase A OS=Lactococcus lact... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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