DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_MOUSE (Ribose-5-phosphate isomerase OS=Mus musculus GN=Rpia PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 76/201 (37.81%), Postives = 115/201 (57.21%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  HAV RI E ++Q  L +++ IPTS +  +  +  G+ LSDLD +P +DLAIDGADEVD  +NL+KG GG L +EK+V G   +F+VI D  K   +LG      +P+EV+P  +   ++ +   F   G   +LR   ++  P VTDNGN+++D    + +      +  I    GVV+ G+F++MA  V    + G
Sbjct:   99 STIVHAVQRIAERVKQENL-DLICIPTSFQARQLILQYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDRWHKGIPIEVIPMAYVPVSRAVAQKF---GGEVELRMAVNKAGPVVTDNGNFILDWKFDR-VHKWSEVNTAIKMTPGVVDTGLFINMAERVYFGMQDG 294          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_METEP (Ribose-5-phosphate isomerase A OS=Methylobacterium extorquens (strain PA1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 78/201 (38.81%), Postives = 111/201 (55.22%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD---QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA   +  +GE +R G    + G+PTS+ T       GIPL+ L+  P +DL IDGADEVD  + L+KG G +LLREK+V  A ++ VVI D SK V  LG     +PVEV  +    T + ++      GC  +     D    P +TD G+ ++DL L + I D +  S  +  + GVVEHG+FL +A   I+A+  G
Sbjct:   30 STAAAFIKLLGERVRAG--LKVTGVPTSEATRIACEREGIPLATLEDLPELDLTIDGADEVDGSLRLIKGGGAALLREKIVAVASRRMVVIADASKHVETLG--AFPLPVEVNLFGIGATTRAVEAAVARAGCTGETVRRHDASGAPLLTDGGHAILDLRLGR-IPDPEALSAGLWAVPGVVEHGLFLGIADAAILAAAEG 225          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BIFLO (Ribose-5-phosphate isomerase A OS=Bifidobacterium longum GN=rpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 80/199 (40.20%), Postives = 113/199 (56.78%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFV-TDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  VD +G   ++  L    G+ TS++T  QA S GI + D+D    +D+ IDGADEVD   N +KG G +LL EK+V     + V IVDESK+V  +G     +PVEV+P    F A ++   FE  G    LR   D   V TD  N+V+DL+L++ I   +  +++++   GVVEHG+FL+M   VIV    G
Sbjct:   33 STVKFLVDELGRRHQEEGL-EFTGVTTSRRTQAQAESYGIKIVDIDDVDHIDVTIDGADEVDKNFNGIKGGGAALLWEKIVATNSNQIVWIVDESKVVDTIG--KFPLPVEVIP----FGAGQVIKKFEARGYKPVLRLDADGKEVRTDENNFVVDLHLER-IDHPQELAEDLINTVGVVEHGLFLNMVDKVIVGDPNG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BIFLD (Ribose-5-phosphate isomerase A OS=Bifidobacterium longum (strain DJO10A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.073e-26
Identity = 80/199 (40.20%), Postives = 113/199 (56.78%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFV-TDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  VD +G   ++  L    G+ TS++T  QA S GI + D+D    +D+ IDGADEVD   N +KG G +LL EK+V     + V IVDESK+V  +G     +PVEV+P    F A ++   FE  G    LR   D   V TD  N+V+DL+L++ I   +  +++++   GVVEHG+FL+M   VIV    G
Sbjct:   33 STVKFLVDELGRRHQEEGL-EFTGVTTSRRTQVQAESYGIKIVDIDDVDHIDVTIDGADEVDKNFNGIKGGGAALLWEKIVATNSNQIVWIVDESKVVDTIG--KFPLPVEVIP----FGAGQVIKKFEARGYKPVLRLDADGKEVRTDENNFVVDLHLER-IDHPQELAEDLINTVGVVEHGLFLNMVDKVIVGDPNG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CAEEL (Probable-ribose 5-phosphate isomerase OS=Caenorhabditis elegans GN=rpia-1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.829e-26
Identity = 70/196 (35.71%), Postives = 104/196 (53.06%), Query Frame = -2
Query:   19 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIG--DLKVASDNILRLAGVVEHGMFLDMATTVIVA 600
            ST K+ V+ + +  + G L +I+ +PTS  T +  +  G+P+SDLDS+P +D+ IDGADEVD     +KG GG L +EK+V  A K F VI D  K   HLG     +P+EV+P   +   + +    E   C  +       P VTDNGN++ID   +K++   D       +    G+VE G+F+     V  A
Sbjct:   42 STVKYLVEYLKQGFQNGSLKDIICVPTSFLTKQWLIESGLPVSDLDSHPELDVCIDGADEVDGQFTCIKGGGGCLAQEKIVQTAAKNFYVIADYLKDSKHLGDRYPNVPIEVLPLAAQPLLRSIPRA-EGGSCQLRQAVKKCGPIVTDNGNFIIDWQFEKNVSGRDWFAIQQRLANTPGIVETGLFIGCVDAVFFA 236          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACBA (Ribose-5-phosphate isomerase A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpiA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.121e-26
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG-DQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST ++ +D +GE ++   L +I+G+ TS ++ +QA SLGI + +LD    +DL IDGADE+D     +KG G + L EK+V     K + IVDESK+V HLG     +P+EV+P+      ++L  +    G     R T   +  +TD+ NY+IDL+L + I      ++ +  + GVVEHG+FLD   TVIV  + G
Sbjct:   30 STVRYMIDALGERVKNEGL-HIIGVATSDRSAKQAESLGITIKELDEVDHLDLTIDGADEIDDNFQGIKGGGAAHLWEKIVAINSTKNMWIVDESKMVHHLG--AFPLPLEVIPFGSSHVLEKLNKM----GFNPSFRMTDTGEHVLTDSKNYIIDLHLGR-IDHPHDLANTLNGIVGVVEHGLFLDTVNTVIVGRQDG 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACC3 (Ribose-5-phosphate isomerase A OS=Lactobacillus casei (strain ATCC 334) GN=rpiA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.952e-26
Identity = 78/198 (39.39%), Postives = 115/198 (58.08%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  + V+ I + ++   L N+ G+ TS +T +QA SLGIP+  LD    +DL IDGADEVD     +KG G S L EK+V     + + IVDE+KLV  LG     +P+EV+P+      +RL D  E      +L   G +  +TD+ NY+IDL+L K I    + ++ + +  G+VEHG+FLD+  TV+V +  G
Sbjct:   30 STVVYLVEAIAQRIKDEHL-NLTGVATSVRTRKQAESLGIPMKALDEVGQIDLTIDGADEVDKHFQGIKGGGRSHLIEKIVAINSARNIWIVDETKLVDTLG--KFPLPLEVIPFGSGKLLQRLAD--EGLKPAYRLNEDGSKA-LTDSKNYIIDLHLGK-IEHPHLLAEWLNKQVGIVEHGLFLDLVKTVVVGTTHG 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_HALWD (Ribose-5-phosphate isomerase A OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpiA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.023e-25
Identity = 70/200 (35.00%), Postives = 111/200 (55.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA  A+D +G+ +  G   +I G+PTS  T ++A+  GIPL+ +++   +D+AIDG+DE++  + L+KG G +  REK++     +F+V+ DESKLV  L      +PV  +P   K    RL  L    G    LR  T  D P +TDNGN V D      I + +  + ++  + G V HG+F+++A    + +E G
Sbjct:   34 STAAAAIDALGDAVAAGY--DIHGVPTSFATRDRAIEAGIPLTRIEAVDHIDVAIDGSDEINNNLTLIKGGGAAHAREKVIDATADQFIVVADESKLVETLSE---PVPVSTLPMAQKPVKHRLDSL----GATTTLRSATMKDGPVITDNGNIVFDCAF-GHIENAEALAKSLAEIPGTVAHGLFVNLADVACIGTENG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PICTO (Ribose-5-phosphate isomerase A OS=Picrophilus torridus GN=rpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 73/191 (38.22%), Postives = 110/191 (57.59%), Query Frame = -2
Query:   28 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTV 600
            STA + ++ + EL++ G    I GIPTSKK+ E   S  IP+    +   +D+  DGADE DP+ NL+KG GG+L+REK+V    ++F V+VD SK    L      +PVEV+P+  + T + ++ L    GC A  R   D+ F++DNGNY+ID        +L+     I  + GVVE G+F  ++T +
Sbjct:   29 STAYYFIEGLSELVKNG--LRITGIPTSKKSEELCRSFNIPVDY--NIKDIDIDFDGADEFDPYGNLIKGGGGALVREKIVAYNSREFYVLVDHSKYSERL--HKFPLPVEVLPFMSEKTLENIERL----GCRASFR--DDKKFISDNGNYIIDCVFSYTDPELE---SQIKMIPGVVEVGIFRHLSTKI 204          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_METTH (Ribose-5-phosphate isomerase A OS=Methanobacterium thermoautotrophicum GN=rpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 75/201 (37.31%), Postives = 113/201 (56.22%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST  + ++ +G  +R+  L  ++G+PTS ++   A   GI ++ L  + V D+A+DGADEVDP +NL+KG G +   EK+V  +   F+VIVDESKLV  LG     +PVEV+P   +    +L    E  G    +R++   D P VTDNGN+V+D      I D       +  + GVVE+G+F  +A  VI  +  G+
Sbjct:   31 STTHYFIEELGRRVREEGL-EVMGVPTSYQSMFLAAESGIKVTSLAEHDV-DVAVDGADEVDPDLNLIKGGGAAHTLEKIVDSSAASFIVIVDESKLVERLG--AFPLPVEVIPAACRPVKLKL----ESMGASVNIRSSEGKDGPVVTDNGNFVLDAAFGV-IDDPGAMESRLNNIPGVVENGIFAGIADMVIAGTSEGL 222          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_MOUSE6.288e-2737.81Ribose-5-phosphate isomerase OS=Mus musculus GN=Rp... [more]
RPIA_METEP8.212e-2738.81Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_BIFLO8.212e-2740.20Ribose-5-phosphate isomerase A OS=Bifidobacterium ... [more]
RPIA_BIFLD1.073e-2640.20Ribose-5-phosphate isomerase A OS=Bifidobacterium ... [more]
RPIA_CAEEL1.829e-2635.71Probable-ribose 5-phosphate isomerase OS=Caenorhab... [more]
RPIA_LACBA3.121e-2638.19Ribose-5-phosphate isomerase A OS=Lactobacillus br... [more]
RPIA_LACC36.952e-2639.39Ribose-5-phosphate isomerase A OS=Lactobacillus ca... [more]
RPIA_HALWD2.023e-2535.00Ribose-5-phosphate isomerase A OS=Haloquadratum wa... [more]
RPIA_PICTO3.450e-2538.22Ribose-5-phosphate isomerase A OS=Picrophilus torr... [more]
RPIA_METTH3.450e-2537.31Ribose-5-phosphate isomerase A OS=Methanobacterium... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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