DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PICST (Ribose-5-phosphate isomerase OS=Pichia stipitis GN=RKI1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.506e-25
Identity = 72/192 (37.50%), Postives = 105/192 (54.69%), Query Frame = -2
Query:   37 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ---PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMA 600
            ST  +  +RIG+L  +    + V IPT  ++ +  +  G+ L  ++ +P +D+A DGADEVDP +NL+KG G  L +EK+V  + K FVV+ D  K   +LG      +P+E+VP  +   AK +QDL +       LR  G     P +TDN N+++D      I D K   D I  L GVVE G+F  MA
Sbjct:   36 STVVYVAERIGQLANKD---SFVCIPTGFQSKQLIIDNGLKLGAIEQFPEIDIAFDGADEVDPALNLIKGGGACLFQEKLVAASAKTFVVVADYRKKSDNLGIQWKQGVPIEIVPNSY---AKVIQDLKKLGAITVNLRQGGSAKAGPIITDNNNFLLDADFGA-IKDPKALHDQIKALVGVVETGLFTSMA 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CANAL (Ribose-5-phosphate isomerase OS=Candida albicans GN=RKI1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.885e-25
Identity = 74/208 (35.58%), Postives = 115/208 (55.29%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFTAKRLQDLFEDCGCV-AKLRTTGDQ---PFVTDNGNYVIDLYLKKDIGDLKVAS-----DNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  +A +RIG+L  +    + + IPT  ++ +  +  G+ L  ++ YP +D+A DGADEVDP +NL+KG G  L +EK+V  + KKFVV+ D  K    LG S    +P+E+VP  +   +K +Q+L +  G     LR  G     P +TDN N+++D     D G++++ +     + I  L GVVE G+F +MA       E G
Sbjct:   59 STVIYAAERIGQLDNKD---SFICIPTGFQSKQLIIDNGLRLGTIEQYPDIDIAFDGADEVDPQLNLIKGGGACLFQEKLVAASAKKFVVVADYRKKSDKLGQSWRQGVPIEIVPNSY---SKIIQELSKKLGAKNVDLRQGGKAKAGPIITDNNNFLLD----ADFGEIEIDNVGKLHEQIKLLVGVVETGLFTNMANKAYFGEEDG 256          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACDB (Ribose-5-phosphate isomerase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 81/199 (40.70%), Postives = 107/199 (53.77%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  +D +G+    G LT    + TS ++ +Q    G  +S L     VDL +DGAD VD  +N +KG G +L  EK V    KK V IVDESK+V HL  SG A+PVEV+P       KRL D     G   + R T D Q   T  GNY++DL L + I      +D +    GVVEHG+FL++   VI+A + G
Sbjct:   33 STVKFFIDELGKKKAAG-LTLKAVVTTSSRSQKQLEGYGFTVSPLSEVDQVDLTVDGADRVDKQLNGIKGGGAALTLEKNVAVNSKKNVWIVDESKVVDHL--SGFALPVEVLPISCMQVEKRLADE----GLKPEFRLTEDGQRLKTHYGNYILDLKLDR-IPVPSGLADYLDHTVGVVEHGLFLNICDQVIIARDNG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACDA (Ribose-5-phosphate isomerase A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 81/199 (40.70%), Postives = 107/199 (53.77%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  +D +G+    G LT    + TS ++ +Q    G  +S L     VDL +DGAD VD  +N +KG G +L  EK V    KK V IVDESK+V HL  SG A+PVEV+P       KRL D     G   + R T D Q   T  GNY++DL L + I      +D +    GVVEHG+FL++   VI+A + G
Sbjct:   33 STVKFFIDELGKKKAAG-LTLKAVVTTSSRSQKQLEGYGFTVSPLSEVDQVDLTVDGADRVDKQLNGIKGGGAALTLEKNVAVNSKKNVWIVDESKVVDHL--SGFALPVEVLPISCMQVEKRLADE----GLKPEFRLTEDGQRLKTHYGNYILDLKLDR-IPVPSGLADYLDHTVGVVEHGLFLNICDQVIIARDNG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LACAC (Ribose-5-phosphate isomerase A OS=Lactobacillus acidophilus GN=rpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 77/198 (38.89%), Postives = 107/198 (54.04%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST    +D +G+   +  L     + TS ++ +Q  SLG  +S+L      DL +DG+D V   ++ +KG GG+L  EK V    KK V IVDESKLV  L  SG  +PVEV+P   +   +R    FE  G   + RT GD+ ++T  GNY+IDL +   I      +D +    GVVEHG+FLDM   VI+A   G
Sbjct:   33 STVAFFIDALGKRKDEEDLKLKAIVTTSNRSKKQLESLGFEVSELADIDQADLTVDGSDRVADNLDGIKGGGGALTLEKNVAINSKKIVWIVDESKLVHRL--SGFPLPVEVLPISCEQNFRR----FEQEGLKPQWRTDGDKRYITHYGNYIIDLAV-DPIPAPHGLADYLDHTVGVVEHGLFLDMCDEVIIAHSDG 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA2_YERPS (Ribose-5-phosphate isomerase A 2 OS=Yersinia pseudotuberculosis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.712e-24
Identity = 68/196 (34.69%), Postives = 109/196 (55.61%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG---CVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            +T+   V  +G+ + +G    +    TS+ T E A  +GI LSD +    +DL IDG DE+D   N++KG G  LL EK++  A K+ + I DE+K+V  LG     +PVE+VP+ WK T +R++ +  + G        R  G  P +TD+GN+++D +    I   +     + R+ GVVE+G+F   AT ++V
Sbjct:   33 TTSHFFVRELGQHVAKG--LQLTCTTTSRATSEVARDVGIELSDPNEMNEIDLTIDGPDEIDRRFNMIKGGGACLLWEKIIAHASKRMICICDETKIVNCLG--QFPLPVEIVPFAWKQTERRVERVLAEQGLHHVPIIRRMGGGHPVITDSGNFILDCHCGAIITAPEPLEIELNRIPGVVENGLFTREATGMVV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA2_YERPE (Ribose-5-phosphate isomerase A 2 OS=Yersinia pestis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.712e-24
Identity = 68/196 (34.69%), Postives = 109/196 (55.61%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG---CVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            +T+   V  +G+ + +G    +    TS+ T E A  +GI LSD +    +DL IDG DE+D   N++KG G  LL EK++  A K+ + I DE+K+V  LG     +PVE+VP+ WK T +R++ +  + G        R  G  P +TD+GN+++D +    I   +     + R+ GVVE+G+F   AT ++V
Sbjct:   33 TTSHFFVRELGQHVAKG--LQLTCTTTSRATSEVARDVGIELSDPNEMNEIDLTIDGPDEIDRRFNMIKGGGACLLWEKIIAHASKRMICICDETKIVNCLG--QFPLPVEIVPFAWKQTERRVERVLAEQGLHHVPIIRRMGGGHPVITDSGNFILDCHCGAIITAPEPLEIELNRIPGVVENGLFTREATGMVV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_HALMA (Ribose-5-phosphate isomerase A OS=Haloarcula marismortui GN=rpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.921e-24
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVT 600
            STA +A+  IG+ +  G   ++VG+PTS ++ + A   GIPL+DLD    VDLAIDGADEV    NL+KG G +  REK+V  +  +F+V+ D +K    L      +PVEV+P         +++L  D     +     D P VTDNGN V+D      I D    + ++  L GVVEHG+F+ MA  + V +  GVT
Sbjct:   33 STAAYAIRAIGQAVDAG--LDVVGVPTSFQSRQLARDCGIPLADLDDVS-VDLAIDGADEV-ASGNLIKGGGAAHAREKIVDASADRFLVVADPTKEAAVL---SYPVPVEVLPMARSTVVTAVEELGGD--PTLRRAERKDGPVVTDNGNLVLDCDF-NSIHDPAALASDLAALPGVVEHGLFVGMADEIHVGTADGVT 222          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CAUSK (Ribose-5-phosphate isomerase A OS=Caulobacter sp. (strain K31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.921e-24
Identity = 69/180 (38.33%), Postives = 104/180 (57.78%), Query Frame = -2
Query:    4 NIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV-AKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 540
            +I G+PTS+ T   A  LGI L+ LD    +DL +DGADE+ P ++L+KG G +LLREK+V  A K+ VVI D +K V  LG     +P+EVV +    T +RL D+  +   +  +LR       VTD GN + D+     I +    +  +  + GVV+HG+FLD+A   ++ ++ GV
Sbjct:   45 DIRGVPTSEATANLARELGIALTALDDVKSIDLTVDGADEIGPGLSLIKGGGAALLREKLVWEASKRCVVIADAAKHVKTLG--KFPLPIEVVRFGHVHTGQRLADIAAEFDLLPPRLRMADRGVVVTDGGNVIYDM-PSGVIAEPAALAAALKTVTGVVDHGLFLDLADEALLGTDQGV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CHLTR (Ribose-5-phosphate isomerase A OS=Chlamydia trachomatis GN=rpiA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.815e-24
Identity = 65/189 (34.39%), Postives = 110/189 (58.20%), Query Frame = -2
Query:   37 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR-TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMA 600
            STA+  +  +G+ +R  +L  I  + +S+ +   A ++GIPLSD      VDL +DGADEVDP + ++KG GG+L REK+++ + K+ V++VDE KLVP LG    ++P+E+ P    F    +Q +    G   + R T+  + F+TDNGNY+ D+       + +     +L++ G+++ G  +  A
Sbjct:   41 STAREFILALGDRVRTERLV-ITAVASSRISQLLAEAVGIPLSDHSLLQDVDLVVDGADEVDPCLRMIKGGGGALFREKILLQSGKRNVILVDERKLVPTLG--KFSLPIEIAP----FGCSSVQRILNKQGYFGEWRETSAGERFITDNGNYIYDVRTPDSYANPEEDMIRLLQIRGIIDVGFVIAKA 222          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_PICST4.506e-2537.50Ribose-5-phosphate isomerase OS=Pichia stipitis GN... [more]
RPIA_CANAL5.885e-2535.58Ribose-5-phosphate isomerase OS=Candida albicans G... [more]
RPIA_LACDB1.004e-2440.70Ribose-5-phosphate isomerase A OS=Lactobacillus de... [more]
RPIA_LACDA1.004e-2440.70Ribose-5-phosphate isomerase A OS=Lactobacillus de... [more]
RPIA_LACAC1.004e-2438.89Ribose-5-phosphate isomerase A OS=Lactobacillus ac... [more]
RPIA2_YERPS1.712e-2434.69Ribose-5-phosphate isomerase A 2 OS=Yersinia pseud... [more]
RPIA2_YERPE1.712e-2434.69Ribose-5-phosphate isomerase A 2 OS=Yersinia pesti... [more]
RPIA_HALMA2.921e-2439.00Ribose-5-phosphate isomerase A OS=Haloarcula maris... [more]
RPIA_CAUSK2.921e-2438.33Ribose-5-phosphate isomerase A OS=Caulobacter sp. ... [more]
RPIA_CHLTR3.815e-2434.39Ribose-5-phosphate isomerase A OS=Chlamydia tracho... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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