CN184956

Overview
NameCN184956
Unique NameCN184956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:19..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184956 vs. ExPASy Swiss-Prot
Match: RS29_SCHPO (40S ribosomal protein S29 OS=Schizosaccharomyces pombe GN=rps29 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.752e-12
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:   62 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 229
            M H NVW SHP+ YG GSR C   G    +IRKYGL   RQ FR  A +IGFVKYR
Sbjct:    1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56
The following BLAST results are available for this feature:
BLAST of CN184956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_SCHPO2.752e-1258.9340S ribosomal protein S29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184956 ID=CN184956; Name=CN184956; organism=Citrus sinensis; type=EST; length=446bp
TTTACACAAGCTTAAGCGAACCGGCTTTTCTCTTTGTCAAGGAAGGAGAA
AACAATCAATCATGGGTCACTCCAACGTTTGGAACTCTCACCCCAAGACT
TACGGCCCCGGTTCTCGCGCTTGCCGGGTTTGTGGGAATCCTCATGCAAT
AATCAGGAAGTATGGGCTCATGTGCTGCAGACAATGCTTCCGTAGCAATG
CCAAGGAGATTGGTTTTGTTAAGTACCGCTAAATGATTAACATGTTGTCA
ACATCAGAAGGGGGGTTACCAGTACCATGCTGATTTTGTTTATCTGTGAT
ACCTGTAGCGAATTTCTGTTTCTCAAGGATTGTTAAGCGATGTTTTGTCT
TAAATTGATTCAATGTTTGACAAAGCAATTGTTGGACTAAGAATATCATT
GATCATTCTTATTAAGGTTTAATCATTCTCAAAAAAAAAAAAAAAA
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