CN184953

Overview
NameCN184953
Unique NameCN184953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.895e-36
Identity = 72/119 (60.50%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSKEDIERMVQEAEKYKAEDE+ + KV +KN L++YA++M+ TV+D+K+ GK+   D Q I    +E + WLD NQ AE +EFE + KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLDSYAFNMKATVEDEKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.895e-36
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G  N+ITITNDKGRLSKE+IERMVQEAEKYKAEDE  + +V AKN LE+YA++M++ V+D+ + GK++ ADK+K+     E + WLD N LAE DEFE K KELE +CNPII  +YQ
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRDRVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIITGLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.895e-36
Identity = 72/119 (60.50%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G  N+ITITNDKGRLSKE+IERMVQEAEKYKAEDE  +++V AKN LE+YA++M++ V+D+ + GK++ ADK+K+     E + WLD N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKSVVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSK+DI+RMVQEAE+YK+EDE  + +V AKN +E+Y Y+++ TV+D+K+ GK++  DK KI     E + WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSK+DI+RMVQEAE+YK+EDE  + +V AKN +E+Y Y+++ TV+D+K+ GK++  DK KI     E + WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 72/119 (60.50%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G  N+ITITNDKGRLSKE+IERMVQEAEKYKAEDE  +++V AKN LE+YA +M++ V+D+ + GK++ ADK+K+     E + WLD N LAE DEFE K KELE +CNPII+ +YQ
Sbjct:  491 STGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQ 609          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 71/119 (59.66%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSKEDIERMVQEAEKYK ED+  + KV +KN LE+YA++M++TV+D+K+ GK++  DK KI +  +E + WLD NQ AE +E+E   KELE +CNPII K+YQ
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.688e-35
Identity = 67/115 (58.26%), Postives = 96/115 (83.48%), Query Frame = -1
Query:  250 KNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 594
            +N+ITITNDKGRLSKE+IERMV EAEKY+ EDE+ K+ ++AKN LE+Y ++M++T++D+K+  K++ +DKQ I    ++T++WLD NQLA+ +E+E K KELEG+CNPII K+YQ
Sbjct:  498 ENKITITNDKGRLSKEEIERMVNEAEKYRNEDEKQKETIQAKNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.688e-35
Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSK+DI+RMVQEAE+YK+EDE  + +V AKN +E+Y Y+++ TV+D+K+ GK++  DK KI     E + WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.688e-35
Identity = 69/119 (57.98%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G +N+ITITNDKGRLSK+DI+RMVQEAE+YK+EDE  + +V AKN +E+Y Y+++ TV+D+K+ GK++  DK KI     E + WLD NQ+AE DE+E K KELE +CNPII+K+YQ
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615          
The following BLAST results are available for this feature:
BLAST of CN184953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
HSP7C_CHICK9.895e-3660.50Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP71_CANFA9.895e-3660.50Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HS71A_PIG9.895e-3660.50Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP72_RAT1.292e-3557.98Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE1.292e-3557.98Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP71_CERAE1.292e-3560.50Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HSP70_ONCMY1.292e-3559.66Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7D_MANSE1.688e-3558.26Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP72_CAPHI1.688e-3557.98Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN1.688e-3557.98Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184953 ID=CN184953; Name=CN184953; organism=Citrus sinensis; type=EST; length=606bp
AAAATTACATCCGTAACATTATTTATATTTATCTCTCAAACGATTCCTAA
ACCTTTGCATCATTTGACAACACACACCATCATAAGAAAAAACAGAGCAG
AAGGAACGGAACATAGCAGGAAGGACTTCCCTAGCGACAACGTTTTAACT
TCAATCAACTTCCTCAATCTTAGGCCCAGCACCGGCACCAGAACCACCAG
ACCCGGAGGAGCCATAGCCGCCACCCATTGGAACATCCCCACCGTCACCT
TGATACATCTTTGCTATTATGGGATTGCACAAGCCCTCCAACTCCTTCAA
CTTGTCCTCGAACTCATCAACTTCAGCCAGTTGATTCCCGTCAAGCCACT
CGACAGTCTCATCAACTGCCTTCTCAATCTTTTGCTTGTCTGCTGCGGCC
AATTTTCCTGCAACCTTGTCATCCTTCACTGTATTCCTCATACTGTACGC
GTAATTCTCTAACTTGTTCTTCGCCTCCACCTTCTTCTTCACTTGTTCAT
CTTCAGCCTTGTACTTCTCTGCCTCTTGCACCATCCTCTCGATATCTTCC
TTGCTCAATCTTCCCTTATCATTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGT
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