CN184953

Overview
NameCN184953
Unique NameCN184953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP8_TOBAC (Luminal-binding protein 8 (Fragment) OS=Nicotiana tabacum GN=BIP8 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34
Identity = 67/119 (56.30%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  250 AGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 603
            +G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK++++A+N LE Y Y+MRN + D DK+A KL + +K+KIE A  E +EWLD NQ AE +++E+KLKE+E +CNPII  +YQ
Sbjct:  154 SGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 272          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.430e-34
Identity = 67/119 (56.30%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  250 AGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 603
            +G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK++++A+N LE Y Y+MRN + D DK+A KL + +K+KIE A  E +EWLD NQ AE +++E+KLKE+E +CNPII  +YQ
Sbjct:  528 SGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 646          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.092e-34
Identity = 68/119 (57.14%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G  N+ITITNDKGRLSKE+IERMVQEAE+YKAEDE  +++V AKN LE+YA++M++ V+D+ + GK++ ADK+K+     E + WLD N LAE +EF  K +ELE +CNPII+ +YQ
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDSNTLAEKEEFVHKREELERVCNPIISGLYQ 612          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.092e-34
Identity = 67/119 (56.30%), Postives = 96/119 (80.67%), Query Frame = -1
Query:  250 AGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 603
            +G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK+K++A+N LE Y Y+M+N + D DK+A KL + +K+KIE AV E +EWLD NQ AE +++++KLKE+E +CNPII  +YQ
Sbjct:  527 SGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQ 645          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.262e-34
Identity = 67/118 (56.78%), Postives = 95/118 (80.51%), Query Frame = -1
Query:  250 GVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 600
            G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK++++A+N LE Y Y+M+N + D DK+A KL + +K+KIE AV E +EWLD NQ AE +++E+KLKE+E +CNPII  +YQ
Sbjct:   31 GKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 148          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = -1
Query:  250 GVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 600
            G +NQI +TNDKGRLS+ +IERMV+EA KY+AED+   ++++AKN LENYA+SM+N V D  VAGK+  ADK+ I  AV+E +EWL+ NQ A  +E+E + KELE LC PI+  MYQ
Sbjct:  499 GKRNQIVLTNDKGRLSRAEIERMVREAAKYEAEDKDQVRQIDAKNGLENYAFSMKNAVNDPNVAGKIEEADKKTITSAVEEALEWLNNNQEASKEEYEHRQKELENLCTPIMTNMYQ 615          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  253 GVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 600
            G  N+I ITNDKGRLSKE+IERM+ EAEKYKAEDE    ++ AKN LE+YAYS++NT+ D KV  KL AADK+K++  +D+ V WLD NQ A  +E+E + KELEG+ NPI+ K Y
Sbjct:  495 GKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAETARIGAKNGLESYAYSLKNTLSDSKVDEKLDAADKEKLKSEIDKVVAWLDDNQTATKEEYESQQKELEGVANPIMMKFY 610          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: HSP70_THEAN (Heat shock 70 kDa protein OS=Theileria annulata GN=TA11610 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  250 TAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 606
            + G    +TITNDKGRLS+E+I+RMV+EAEKYK EDE+ ++ VE+++KLENY YSM+NT+ +D+V  KL A +       + + ++W++ NQLAE DE+EDKLK +EG+CNP++ K+YQ
Sbjct:  495 STGKSEHVTITNDKGRLSQEEIDRMVEEAEKYKEEDEKRRRCVESRHKLENYCYSMKNTLSEDQVKQKLGADEVDSALSTITDALKWVEANQLAEHDEYEDKLKHVEGVCNPLVTKLYQ 613          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 66/119 (55.46%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  250 AGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 603
            +G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK++++A+N LE Y Y+MRN + D DK+A KL + +K+KIE A  E +EWLD NQ AE +++++KLKE+E +CNPII  +YQ
Sbjct:  527 SGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKERIDARNSLETYVYNMRNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVYQ 645          
BLAST of CN184953 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 66/118 (55.93%), Postives = 94/118 (79.66%), Query Frame = -1
Query:  250 GVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 600
            G   +ITITNDKGRLS+E+IERMV+EAE++  ED++VK++++A+N LE Y Y+M+N + D DK+A KL + +K+KIE A  E +EWLD NQ AE +++E+KLKE+E +CNPII  +YQ
Sbjct:  152 GKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVYQ 269          
The following BLAST results are available for this feature:
BLAST of CN184953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
BIP8_TOBAC5.430e-3456.30Luminal-binding protein 8 (Fragment) OS=Nicotiana ... [more]
BIP4_TOBAC5.430e-3456.30Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
HSP71_RAT7.092e-3457.14Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
BIP_SPIOL7.092e-3456.30Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
BIP3_TOBAC9.262e-3456.78Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
HSP70_TRYCR1.210e-3357.26Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
HSP70_TRIRU1.210e-3359.48Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HSP70_THEAN1.210e-3352.94Heat shock 70 kDa protein OS=Theileria annulata GN... [more]
BIP5_TOBAC1.210e-3355.46Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP1_TOBAC1.210e-3355.93Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184953 ID=CN184953; Name=CN184953; organism=Citrus sinensis; type=EST; length=606bp
AAAATTACATCCGTAACATTATTTATATTTATCTCTCAAACGATTCCTAA
ACCTTTGCATCATTTGACAACACACACCATCATAAGAAAAAACAGAGCAG
AAGGAACGGAACATAGCAGGAAGGACTTCCCTAGCGACAACGTTTTAACT
TCAATCAACTTCCTCAATCTTAGGCCCAGCACCGGCACCAGAACCACCAG
ACCCGGAGGAGCCATAGCCGCCACCCATTGGAACATCCCCACCGTCACCT
TGATACATCTTTGCTATTATGGGATTGCACAAGCCCTCCAACTCCTTCAA
CTTGTCCTCGAACTCATCAACTTCAGCCAGTTGATTCCCGTCAAGCCACT
CGACAGTCTCATCAACTGCCTTCTCAATCTTTTGCTTGTCTGCTGCGGCC
AATTTTCCTGCAACCTTGTCATCCTTCACTGTATTCCTCATACTGTACGC
GTAATTCTCTAACTTGTTCTTCGCCTCCACCTTCTTCTTCACTTGTTCAT
CTTCAGCCTTGTACTTCTCTGCCTCTTGCACCATCCTCTCGATATCTTCC
TTGCTCAATCTTCCCTTATCATTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGT
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