CN184952

Overview
NameCN184952
Unique NameCN184952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:50..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 72/152 (47.37%), Postives = 97/152 (63.82%), Query Frame = 3
Query:  171 SREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            +  MFE +LP  N+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFA T  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P  +ATDPVLSF++A+WF
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWF 218          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 GGELG--KIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIW 617
            GG  G   +++ + FE +LP+ +DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF A T H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP L+ATDP ++FK+A+W
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALW 244          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 77/161 (47.83%), Postives = 104/161 (64.60%), Query Frame = 3
Query:  147 GGELG--KIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIW 617
            GG  G   +++ + FE +LP+ +DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF A T H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP L+ATDP ++FK+A+W
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALW 244          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 75/174 (43.10%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   99 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            G G   G    G G   G L  II   MF+D+L Y ND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF   T HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P L+ TDP ++FK+A+WF
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWF 206          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 70/155 (45.16%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  156 LGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            +  +IS  +FE +L +        RGFYTYDAFI AA++FP F  +G+  +RKRE+AAF A T HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+GVDLL NP L+ +D  + FK+A+WF
Sbjct:    1 VSSVISSSLFEKMLLH--------RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWF 125          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  129 TGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            +G+ T       +++  +F+ +  +  D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF AH    T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NP L+  DP++SFK+A+WF
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWF 282          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27
Identity = 67/178 (37.64%), Postives = 95/178 (53.37%), Query Frame = 3
Query:   96 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFAH  HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +P  +A  PVL+F++A+W+
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWY 211          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25
Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 3
Query:   96 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FAH  HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P L++++P ++F++ +WF
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWF 211          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 64/176 (36.36%), Postives = 93/176 (52.84%), Query Frame = 3
Query:   96 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            CG G   G   D   G     +  I+++E ++ +      A CP + FYT   F+EA  A+PGFG    +  RKREIAA+FAH  HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+P ++  DP++SFK+++WF
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQEFWDGIASQAA-ANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWF 188          
BLAST of CN184952 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 74/192 (38.54%), Postives = 93/192 (48.44%), Query Frame = 3
Query:   93 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYTNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAHTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPYLLATDPVLSFKSAIWF 620
            NC SG   G   T           G G  G  +  I+S+  F+ ++     A CP + FYT  AF+ A    P FGN G+    KREIAAFFAH  HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G D L NP  +ATD   SFK+A+WF
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIGQAA-ASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWF 230          
The following BLAST results are available for this feature:
BLAST of CN184952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR4.133e-3747.37Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ2.679e-3647.83Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.679e-3647.83Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIB_POPTR7.295e-3443.10Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_AVESA5.780e-3145.16Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.090e-2938.79Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ6.613e-2737.64Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA1.247e-2536.26Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA2.127e-2536.36Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU6.190e-2538.54Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184952 ID=CN184952; Name=CN184952; organism=Citrus sinensis; type=EST; length=622bp
GAGGCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATT
TTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGG
AAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCG
GTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCG
TATACAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGC
TTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATG
AAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCATACTGGCCAT
GAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGG
ATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATC
CTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGT
GGACTTGTTGAACAATCCATACCTACTTGCCACTGATCCAGTACTATCAT
TCAAGTCAGCAATCTGGTTCTG
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