DC887588

Overview
NameDC887588
Unique NameDC887588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:153..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29
Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP        EN WAFE
Sbjct:   42 VPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.700e-28
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXENQWAFE 600
            N IPL NVTG IL+ V+EYCKKHV+     D                +++L +WD +F+K +D  T+F LILAANYLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDFT          EN WAFE
Sbjct:   40 NEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEA--KQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.401e-26
Identity = 67/151 (44.37%), Postives = 81/151 (53.64%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVE----------------------VPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            N IP+PNVTG+ILAKV+EYCKKHVE                           D                +E L  WD  F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FNI+NDFTP        EN W FE
Sbjct:   40 NKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            IPL NVTG ILA V+EYCKKHV +    D                + +L++WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP        EN WAFE
Sbjct:   42 IPLENVTGNILALVIEYCKKHV-LDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.186e-25
Identity = 65/132 (49.24%), Postives = 81/132 (61.36%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQAT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            IPL NVT KIL  V++YC+KHV+                      EEDLK WD DF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND T         ENQWAF+
Sbjct:   41 IPLRNVTSKILKIVIDYCEKHVK-------------------SKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.186e-25
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = -2
Query:  220 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAF 594
            IPL NVTG IL+K++EY K HV  P+ +D                +++L SWD  F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDFTP        EN W F
Sbjct:   42 IPLENVTGDILSKIIEYAKMHVNEPSEEDEDEEA-----------KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.686e-25
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  223 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWA 594
            IPLPNV+  +L KV+E+C+ H      ++                  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP        EN+WA
Sbjct:   41 IPLPNVSSNVLRKVLEWCEHH------KNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23
Identity = 57/126 (45.24%), Postives = 77/126 (61.11%), Query Frame = -2
Query:  223 IPLPNVTGKILAKVVEYCKKHVE--VPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWA 594
            +P+PNV   +L KV+E+ + H +   P   D                   + SWD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP        EN+WA
Sbjct:   77 MPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK-----------SAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            N I +  +T +IL  V+EYC KH  V A                   ++DL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND TP        EN+WAFE
Sbjct:   40 NVILVLKMTSEILEMVIEYCNKH-HVDAANPCS--------------DDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.695e-19
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = -2
Query:  220 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAF 594
            I L NVTGKILA ++EYCKKHV+                      + +  +WD +FVK +D  TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND+TP        +N+WAF
Sbjct:   42 IRLQNVTGKILAIIIEYCKKHVD------------------DVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
The following BLAST results are available for this feature:
BLAST of DC887588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK14_ARATH2.309e-2955.12SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK15_ARATH9.700e-2852.31SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
ASK19_ARATH1.401e-2644.37SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK16_ARATH4.076e-2648.82SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH1.186e-2549.24SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK18_ARATH1.186e-2549.21SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO7.686e-2545.97Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST2.473e-2345.24Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK8_ARATH1.149e-2043.75SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH3.695e-1942.06SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionDC887588 EIC Citrus sinensis cDNA clone EIC0597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887588 ID=DC887588; Name=DC887588; organism=Citrus sinensis; type=EST; length=601bp
TCCACGGTCTTGATAGCAAGCAGGAAAGGATGGACCAGACCAACTGCTAC
CAGTTCCACCAGAACAGACTATTATTTACATTTCAAACAGCTAATAAGTT
CGAAAGTACAATGAGAAAGGAAAAGATAAGCCCTAGAAAACTACATCTAC
ATGTTAAAGACAGCAAGATTGCAAGACAATGATAATGAAAAATTGTCTTT
GTTGAAACAACTTTCACTCAAAAGCCCACTGGTTCTCCCTACGGACCTCT
TCTTCCTCCTCTGGAGTGAAGTCATTCTTGATGTTAAAGGTCTTTCGAAT
CTCCTCCGGAGTCTTTCCCTTGATCATGTCAGCAACAGTCTGGCAGGTAA
GGTCCAGCAGCCCCTTGATGTTCAGGTAGTTTGCTGCCAGGATGAGATCG
AAGAGAGTGGCCTGGTCAACTTTGACGAAGTCAGTGTCCCAGCTTTTGAG
ATCCTCCTCACCACCGTTAGTGGCAGTACCGTTGCTGTTGGCGCCGCTGT
TGTTGCTATCCTGGGTCGCAGGAACCTCCACGTGTTTCTTGCAATACTCA
ACCACCTTCGCCAGGATCTTGCCCGTCACGTTCGGTAACGGGATGCCGTT
A
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