CN184946

Overview
NameCN184946
Unique NameCN184946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 2 
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEGIDFY+
Sbjct:  192 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 2 
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEGIDFY+
Sbjct:  192 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 2 
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEGIDFY+
Sbjct:  192 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.228e-47
Identity = 88/108 (81.48%), Postives = 102/108 (94.44%), Query Frame = 2 
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEV+ATAGDTHLGGEDFDNR+VNHFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q ++EIDSL+EGIDFY+
Sbjct:  188 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVEATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 88/108 (81.48%), Postives = 102/108 (94.44%), Query Frame = 2 
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q ++EIDSL+EGIDFY+
Sbjct:  188 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 89/104 (85.58%), Postives = 101/104 (97.12%), Query Frame = 2 
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGGTFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RALRRLRT+CERAKRTLSS++Q +IEIDSL+EGIDFY+
Sbjct:  194 ERNVLIFDLGGGTFDVSILTIEDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYT 297
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 88/108 (81.48%), Postives = 102/108 (94.44%), Query Frame = 2 
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q ++EIDSL+EGIDFY+
Sbjct:  188 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 88/108 (81.48%), Postives = 101/108 (93.52%), Query Frame = 2 
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+VNHFV+EFKRKHKKD S N RA+RRLRT+CERAKRTLSS+ Q ++EIDSL+EGIDFY+
Sbjct:  188 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDYSQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 88/108 (81.48%), Postives = 102/108 (94.44%), Query Frame = 2 
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q ++EIDSL+EGIDFY+
Sbjct:  188 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYT 295
[Close]
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.963e-47
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 2 
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGG+FDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEGIDFY+
Sbjct:  192 ERNVLIFDLGGGSFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFITEFKRKHKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295
The following BLAST results are available for this feature:
BLAST of CN184946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_HUMAN2.228e-4785.58Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE2.228e-4785.58Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_BOVIN2.228e-4785.58Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HS71B_BOSMU2.228e-4781.48Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HSP71_RAT2.910e-4781.48Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_ONCTS2.910e-4785.58Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HS71B_MOUSE2.910e-4781.48Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_PIG2.910e-4781.48Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_MOUSE2.910e-4781.48Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP7C_DANRE4.963e-4784.62Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184946 ID=CN184946; Name=CN184946; organism=Citrus sinensis; type=EST; length=335bp
GAAGGCTACAAGTGTCGGCGAGAAGAACGTCTTGATCTTTGATCTTGGTG
GTGGTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAA
GTTAAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTTAACCACTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGG
ACATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAA
AGAGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTGA
CTCGCTTTACGAGGGTATTGACTTCTACTCCCCCA
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