CN184946

Overview
NameCN184946
Unique NameCN184946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_RHOMR (Chaperone protein dnaK OS=Rhodothermus marinus GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 43/93 (46.24%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            E  + ++DLGGGT+D+S+L + +G+FEVKAT GDTHLGG++FD R++++   EF+++   D+  +P AL+RL+ + E+AK  LSS  +TT+ +
Sbjct:  189 ELKIAVYDLGGGTYDISILELGDGVFEVKATNGDTHLGGDNFDQRLIDYIADEFQKQEGIDLRKDPMALQRLKEAAEKAKIELSSAMKTTVNL 281          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_PASMU (Chaperone protein dnaK OS=Pasteurella multocida GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEE----GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            G K + ++DLGGGTFD+S++ I+E      FEV +T GDTHLGGEDFDNR++N+ V EFK++   D+  +P A++RL+ + E+AK  LSS  QT + +
Sbjct:  186 GNKTIAVYDLGGGTFDLSIIEIDEVGGEKTFEVLSTNGDTHLGGEDFDNRVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNL 283          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_PARD8 (Chaperone protein dnaK OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 45/93 (48.39%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            +  + +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD+ +++   +EF+R+   D+  +P AL+RL+ + E+AK  LSST  T I +
Sbjct:  185 DMKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTHLGGDDFDHVIIDWLAEEFEREEGVDLRKDPMALQRLKEAAEKAKIELSSTTSTEINL 277          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_MYCLE (Chaperone protein dnaK OS=Mycobacterium leprae GN=dnaK PE=1 SV=5)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            E+ +L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+VN  V +FK     D++ +  A++RLR + E+AK  LSS+  T++ +
Sbjct:  163 EQTILVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSVNL 255          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_MYCLB (Chaperone protein dnaK OS=Mycobacterium leprae (strain Br4923) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            E+ +L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+VN  V +FK     D++ +  A++RLR + E+AK  LSS+  T++ +
Sbjct:  163 EQTILVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSVNL 255          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ + E+AK  LSS  QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_METPB (Chaperone protein dnaK OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ + E+AK  LSS  QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_METEP (Chaperone protein dnaK OS=Methylobacterium extorquens (strain PA1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ + E+AK  LSS  QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_METC4 (Chaperone protein dnaK OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ + E+AK  LSS  QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_ERYRH (Chaperone protein dnaK OS=Erysipelothrix rhusiopathiae GN=dnaK PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.426e-22
Identity = 48/99 (48.48%), Postives = 72/99 (72.73%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEG 316
            E+ VL+FDLGGGTFDVS+L + +G FEV +TAGD  LGG+DFDN +V++ V  FK+++  D+S +  A++RL+ + E+AK+ LSST   +I +  +  G
Sbjct:  161 EEKVLVFDLGGGTFDVSILELADGTFEVLSTAGDNKLGGDDFDNIVVDYLVDIFKKENGIDLSSDKMAMQRLKEAAEKAKKDLSSTVNASISLPFISAG 259          
The following BLAST results are available for this feature:
BLAST of CN184946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOMR9.426e-2246.24Chaperone protein dnaK OS=Rhodothermus marinus GN=... [more]
DNAK_PASMU9.426e-2248.98Chaperone protein dnaK OS=Pasteurella multocida GN... [more]
DNAK_PARD89.426e-2248.39Chaperone protein dnaK OS=Parabacteroides distason... [more]
DNAK_MYCLE9.426e-2251.61Chaperone protein dnaK OS=Mycobacterium leprae GN=... [more]
DNAK_MYCLB9.426e-2251.61Chaperone protein dnaK OS=Mycobacterium leprae (st... [more]
DNAK_METRJ9.426e-2253.33Chaperone protein dnaK OS=Methylobacterium radioto... [more]
DNAK_METPB9.426e-2253.33Chaperone protein dnaK OS=Methylobacterium populi ... [more]
DNAK_METEP9.426e-2253.33Chaperone protein dnaK OS=Methylobacterium extorqu... [more]
DNAK_METC49.426e-2253.33Chaperone protein dnaK OS=Methylobacterium chlorom... [more]
DNAK_ERYRH9.426e-2248.48Chaperone protein dnaK OS=Erysipelothrix rhusiopat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184946 ID=CN184946; Name=CN184946; organism=Citrus sinensis; type=EST; length=335bp
GAAGGCTACAAGTGTCGGCGAGAAGAACGTCTTGATCTTTGATCTTGGTG
GTGGTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAA
GTTAAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTTAACCACTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGG
ACATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAA
AGAGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTGA
CTCGCTTTACGAGGGTATTGACTTCTACTCCCCCA
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