CN184946

Overview
NameCN184946
Unique NameCN184946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_THEM4 (Chaperone protein dnaK OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 46/93 (49.46%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            E+ VL++DLGGGTFDVS+L I +G+ +V AT+G+ HLGG+DFD R+++   +EFK++H  D+  + +AL+RLR + E+AK  LSS  +T I +
Sbjct:  168 EEKVLVYDLGGGTFDVSILEIGDGVIQVIATSGNNHLGGDDFDQRIIDWLAEEFKKQHGVDLKEDKQALQRLRDAAEKAKIELSSKLETDISL 260          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_THEAB (Chaperone protein dnaK OS=Thermosipho africanus (strain TCF52B) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 46/93 (49.46%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            E+ VL++DLGGGTFDVS+L I +G+ +V AT+G+ HLGG+DFD R+++   +EFK++H  D+  + +AL+RLR + E+AK  LSS  +T I +
Sbjct:  168 EEKVLVYDLGGGTFDVSILEIGDGVIQVVATSGNNHLGGDDFDQRIIDWLAEEFKKQHGVDLREDKQALQRLRDAAEKAKIELSSKLETDISL 260          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_SHESR (Chaperone protein dnaK OS=Shewanella sp. (strain MR-7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG----IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            G+  V ++DLGGGTFD+S++ I+       FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ + E+AK  LSST QT + +
Sbjct:  185 GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNL 282          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_SHESM (Chaperone protein dnaK OS=Shewanella sp. (strain MR-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG----IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            G+  V ++DLGGGTFD+S++ I+       FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ + E+AK  LSST QT + +
Sbjct:  185 GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNL 282          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_SHESA (Chaperone protein dnaK OS=Shewanella sp. (strain ANA-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG----IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            G+  V ++DLGGGTFD+S++ I+       FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ + E+AK  LSST QT + +
Sbjct:  185 GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNL 282          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_SHEON (Chaperone protein dnaK OS=Shewanella oneidensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG----IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            G+  V ++DLGGGTFD+S++ I+       FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ + E+AK  LSST QT + +
Sbjct:  185 GDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNL 282          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ + E+AK  LSST QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ + E+AK  LSST QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ + E+AK  LSST QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: DNAK_ONYPE (Chaperone protein dnaK OS=Onion yellows phytoplasma GN=dnaK PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSL 307
            E+ +L+FDLGGGTFDVS+LT+ +G FEV +T+GD  LGG+DFD R+V+  VQEFK+++  D+S +  A++RL+ + E+AK+ LS    + I +  L
Sbjct:  165 EQTILVFDLGGGTFDVSILTLVDGTFEVLSTSGDNALGGDDFDLRIVDFLVQEFKKENSVDLSKDKMAMQRLKDAAEKAKKELSGVTSSQISLPFL 260          
The following BLAST results are available for this feature:
BLAST of CN184946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_THEM41.231e-2149.46Chaperone protein dnaK OS=Thermosipho melanesiensi... [more]
DNAK_THEAB1.231e-2149.46Chaperone protein dnaK OS=Thermosipho africanus (s... [more]
DNAK_SHESR1.231e-2148.98Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHESM1.231e-2148.98Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHESA1.231e-2148.98Chaperone protein dnaK OS=Shewanella sp. (strain A... [more]
DNAK_SHEON1.231e-2148.98Chaperone protein dnaK OS=Shewanella oneidensis GN... [more]
DNAK_RHOS71.231e-2153.33Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT1.231e-2153.33Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA1.231e-2153.33Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_ONYPE1.231e-2148.96Chaperone protein dnaK OS=Onion yellows phytoplasm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184946 ID=CN184946; Name=CN184946; organism=Citrus sinensis; type=EST; length=335bp
GAAGGCTACAAGTGTCGGCGAGAAGAACGTCTTGATCTTTGATCTTGGTG
GTGGTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAA
GTTAAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTTAACCACTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGG
ACATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAA
AGAGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTGA
CTCGCTTTACGAGGGTATTGACTTCTACTCCCCCA
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