CN184946

Overview
NameCN184946
Unique NameCN184946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2456 contig Csv1_Contig2456:1..336. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 185.267 bits (469), Expect = 8.466e-47
Identity = 88/107 (82.24%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            S GE++VLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EIDSLYEGIDFY+
Sbjct:  191 SHGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYT 297          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.106e-46
Identity = 87/104 (83.65%), Postives = 99/104 (95.19%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+NVLIFDLGGGTFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNR+VNHFVQEF+RKHKKD+  N RALRRLRT+CERAKRTLSS+ Q +IEIDSL+EG+DFY+
Sbjct:  192 ERNVLIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYT 295          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.106e-46
Identity = 87/105 (82.86%), Postives = 100/105 (95.24%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            GE++VLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EIDSLYEGIDFY+
Sbjct:  193 GERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYT 297          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.106e-46
Identity = 87/105 (82.86%), Postives = 100/105 (95.24%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            GE++VLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EIDSLYEGIDFY+
Sbjct:  193 GERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYT 297          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.106e-46
Identity = 87/105 (82.86%), Postives = 100/105 (95.24%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            GE++VLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EIDSLYEGIDFY+
Sbjct:  193 GERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYT 297          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.444e-46
Identity = 87/105 (82.86%), Postives = 100/105 (95.24%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            GE++VLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EIDSLYEGIDFY+
Sbjct:  193 GERHVLIFDLGGGTFDVSVLTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYT 297          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.886e-46
Identity = 87/104 (83.65%), Postives = 98/104 (94.23%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            E+N+LIFDLGGGTFDVS+LTIE GIFEVK+TAGDTHLGGEDFDNR+VNHF+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEGIDFY+
Sbjct:  192 ERNLLIFDLGGGTFDVSILTIENGIFEVKSTAGDTHLGGEDFDNRLVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYT 295          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.886e-46
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            K  + GEKNVLIFDLGGGTFDVS+LTIE+GIFE+K+TAGDTHLGGEDFDNRMV+H  +EFKRKHKKDI  N RA+RRLRT+CERAKRTLSS+ Q +IEIDSLYEG+DFY+
Sbjct:  189 KGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFELKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYT 298          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 2.463e-46
Identity = 86/107 (80.37%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            +VGE+NVLIFDLGGGTFDVS+L+I++GIFEVK+TAGDTHLGGEDFDNR+V HFVQEFKRKHKKD++ N RALRRLRT+CERAKRTLSS+ Q +IEIDSL+EG DFY+
Sbjct:  189 AVGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVTHFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYT 295          
BLAST of CN184946 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.463e-46
Identity = 84/105 (80.00%), Postives = 100/105 (95.24%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYS 331
            GE+NVLIFDLGGGTFDVS+LTI+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RKH+KD+S N RALRRLRT+CERAKRTLSS+ Q T+EIDSL+EG+DFY+
Sbjct:  193 GERNVLIFDLGGGTFDVSVLTIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHRKDLSRNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYT 297          
The following BLAST results are available for this feature:
BLAST of CN184946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_MOUSE8.466e-4782.24Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP7A_DROME1.106e-4683.65Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HS71L_PIG1.106e-4682.86Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_MACFA1.106e-4682.86Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN1.106e-4682.86Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HS71L_BOVIN1.444e-4682.86Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP7C_CHICK1.886e-4683.65Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP72_MOUSE1.886e-4679.09Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP7D_DROME2.463e-4680.37Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP76_PIG2.463e-4680.00Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184946 ID=CN184946; Name=CN184946; organism=Citrus sinensis; type=EST; length=335bp
GAAGGCTACAAGTGTCGGCGAGAAGAACGTCTTGATCTTTGATCTTGGTG
GTGGTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAA
GTTAAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTTAACCACTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGG
ACATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAA
AGAGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTGA
CTCGCTTTACGAGGGTATTGACTTCTACTCCCCCA
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