DC887584

Overview
NameDC887584
Unique NameDC887584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:10..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2
Query:  160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2
Query:  160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2
Query:  160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2
Query:  160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK  AFVPNDGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:    1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57
Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK  G+   RKL + RR Q+W D  YKKSHLG   K  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKK  AFVPNDGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:    1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56
Identity = 106/143 (74.13%), Postives = 121/143 (84.62%), Query Frame = -2
Query:  160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585
            MGK  G+ A RKL++HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLIKNGKK  AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:    1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53
Identity = 99/139 (71.22%), Postives = 114/139 (82.01%), Query Frame = -2
Query:  169 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 585
            +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L KN KK AAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.401e-52
Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  166 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 585
            MGK  G+   RKL++HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL KNGKK  AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39
Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G+ AGR LK+ ++RQRW+   YK+  LG + K  P  GS  A+GIVLEK+G+EAKQPNSA+RKC RVQLIKNGK   AF+P DG +N+I+E+DEV + G G  +G A+GDIPGVRFKV KV+G SL  L   KKEKPR
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144          
The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_YEAST2.928e-5877.4640S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA2.928e-5877.4640S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA2.928e-5877.4640S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA2.928e-5877.4640S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_GILMI9.419e-5773.4340S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_CIOIN9.419e-5776.2240S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_SCHPO1.607e-5674.1340S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH3.704e-5371.2240S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI2.401e-5269.5040S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_CENSY1.366e-3960.1430S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionDC887584 EIC Citrus sinensis cDNA clone EIC0591 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bp
AGNGATACTNATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAG
TTCTCTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATT
AATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATC
AGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAA
GAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCT
CCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATT
TTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAGTCT
TCTTTCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAG
TTGGGCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGC
ATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATT
TCTTGTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGC
TTGCGACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGTGTTACGAAG
AGGATTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCAAGANG
ACGCCGCGAGTCCCCGGCCGTAA
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