DC887584
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58 Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2 Query: 160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582 GK RG+ + RKL+ HRR RWA+ +YKK LG +K PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58 Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2 Query: 160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582 GK RG+ + RKL+ HRR RWA+ +YKK LG +K PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58 Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2 Query: 160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582 GK RG+ + RKL+ HRR RWA+ +YKK LG +K PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58 Identity = 110/142 (77.46%), Postives = 123/142 (86.62%), Query Frame = -2 Query: 160 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 582 GK RG+ + RKL+ HRR RWA+ +YKK LG +K PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS Sbjct: 4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57 Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = -2 Query: 160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585 MGK RG+ RKL++HRR Q+W DK YKK+HLG K PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK AFVPNDGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K KE+P+S Sbjct: 1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 9.419e-57 Identity = 109/143 (76.22%), Postives = 118/143 (82.52%), Query Frame = -2 Query: 160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585 MGK G+ RKL + RR Q+W D YKKSHLG K PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKK AFVPNDGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF KKE+PRS Sbjct: 1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2) HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56 Identity = 106/143 (74.13%), Postives = 121/143 (84.62%), Query Frame = -2 Query: 160 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 585 MGK G+ A RKL++HRR +RWAD YKK LG +K PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLIKNGKK AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+ Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53 Identity = 99/139 (71.22%), Postives = 114/139 (82.01%), Query Frame = -2 Query: 169 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 585 +GK RG+ AGRKL HR+ QRWAD + K LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L KN KK AAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK Sbjct: 3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.401e-52 Identity = 98/141 (69.50%), Postives = 115/141 (81.56%), Query Frame = -2 Query: 166 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 585 MGK G+ RKL++HRR QRW DK YKK+H G K PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL KNGKK AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++ K+KP Sbjct: 1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39 Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G+ AGR LK+ ++RQRW+ YK+ LG + K P GS A+GIVLEK+G+EAKQPNSA+RKC RVQLIKNGK AF+P DG +N+I+E+DEV + G G +G A+GDIPGVRFKV KV+G SL L KKEKPR Sbjct: 7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144 The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bpback to top |