DC887584

Overview
NameDC887584
Unique NameDC887584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:10..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.395e-38
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = -2
Query:  169 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 570
            G+ AG+KL   R+  RW+D+ YK+  L  + K  P  G+  AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++ +AF P DG +NYI+E+DEV++ G  GR G + GDIPGVR+KV+KV+G+SL  L K +KEK
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 79/137 (57.66%), Postives = 104/137 (75.91%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK   AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK   AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.849e-37
Identity = 79/137 (57.66%), Postives = 104/137 (75.91%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK   AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:    9 GLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.721e-37
Identity = 79/137 (57.66%), Postives = 103/137 (75.18%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK   AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A++  KK+KP
Sbjct:    9 GLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.721e-37
Identity = 81/137 (59.12%), Postives = 100/137 (72.99%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G  A RKL+  R++ RW D+ YK+  L  +E   P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK+  AF P DG ++YI+E+DEV+I G  G KG A GDIPGVR+KVVKV+ V+L  L K K EKP
Sbjct:    9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSELLKGKIEKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.290e-37
Identity = 82/138 (59.42%), Postives = 100/138 (72.46%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  AKGIVLEKI +EAKQPNSA+RK  RVQLIKNGK   AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.083e-36
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  169 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 570
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++  AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L K +KEK
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = -2
Query:  169 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 570
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++  AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L K +KEK
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKELVKGRKEK 139          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ +   L   R+ +R AD +Y+K  LG ++K    G +  AK IVLEKIG+EAKQPNSAIRK  R QLI  GKK  AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PICTO4.395e-3855.8830S ribosomal protein S12P OS=Picrophilus torridus... [more]
RS12_PYRIL2.181e-3757.6630S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_PYRCJ2.181e-3758.3930S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE2.849e-3757.6630S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_PYRAR3.721e-3757.6630S ribosomal protein S12P OS=Pyrobaculum arsenati... [more]
RS12_METKA3.721e-3759.1230S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS12_THECE8.290e-3759.4230S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_THEVO1.083e-3656.6230S ribosomal protein S12P OS=Thermoplasma volcani... [more]
RS12_THEAC1.414e-3656.6230S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS23_ENCCU1.847e-3658.0940S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionDC887584 EIC Citrus sinensis cDNA clone EIC0591 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bp
AGNGATACTNATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAG
TTCTCTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATT
AATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATC
AGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAA
GAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCT
CCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATT
TTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAGTCT
TCTTTCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAG
TTGGGCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGC
ATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATT
TCTTGTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGC
TTGCGACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGTGTTACGAAG
AGGATTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCAAGANG
ACGCCGCGAGTCCCCGGCCGTAA
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