DC887584
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36 Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNSA+RK RVQLIKNGK AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.412e-36 Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = -2 Query: 166 TRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 576 T G A RKLK R+++RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.150e-36 Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A RKL+ R + RW+ + +K LG + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK AFVP DG +NYI+E+DEV+I G G +G ++GDIPGVR+KV+ V+GVSL AL+ KK+KP Sbjct: 9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 5.373e-36 Identity = 80/138 (57.97%), Postives = 99/138 (71.74%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS +RK RVQLIKNGK AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36 Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A +KLK +R+ RW D YK+ LG K P GS A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG + +I+E+DEV+I G G G ++GDIPGVR+KV KV+ V+L + K EKP Sbjct: 3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36 Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G A RKLK R+++RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.197e-35 Identity = 77/137 (56.20%), Postives = 96/137 (70.07%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G A RKLK R++ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.563e-35 Identity = 77/137 (56.20%), Postives = 96/137 (70.07%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G A RKLK R++ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.042e-35 Identity = 76/137 (55.47%), Postives = 99/137 (72.26%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A +KLKS R++ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG + +I+E+DEV++ G G G ++GDIPGVR+KV KV+ VSL + K K EKP Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35 Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573 RGM A RKL+ R++ RW+D YK+ L + K P G+ A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK AF+P DG L ++ E+DEV+I G G +G A GD+PGVR+KV+KV+GVSL + + +K+KP Sbjct: 8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145 The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bpback to top |