DC887584

Overview
NameDC887584
Unique NameDC887584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:10..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK   AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK   AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.549e-35
Identity = 76/137 (55.47%), Postives = 101/137 (73.72%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ A RKL+  R + RW+ + +K+  L  + K  P  G+  A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK   AFVP DG LN I E+DEV+I G  G +G ++GDIPGVR+KVV V+GVSL A+ K KK+KP
Sbjct:    9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.941e-35
Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = -2
Query:  166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573
            +G+ A RKL+  R +  W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RK  RVQL+KNG+   AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.013e-34
Identity = 74/138 (53.62%), Postives = 103/138 (74.64%), Query Frame = -2
Query:  166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573
            +GM A RKL+  R + RW  + +K+  L  + K  P  G+  A+G+VLEK+GIE++QPNSA+RK  RVQL+KNG+   AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:    8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.323e-34
Identity = 75/145 (51.72%), Postives = 104/145 (71.72%), Query Frame = -2
Query:  163 TNMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 591
            T      G+ A RKL+  R + RW+++ +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+   AFVP DG L  ++E+DEVLI G  G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+
Sbjct:    2 TGKKSPNGLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.257e-34
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = -2
Query:  169 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 573
            RG+ A RKL  +R++ RW+D+ + +  LG   K  P  G+  A+GIVLEKIGIEA+QPNSAIRK  RVQLIKNG++  AF P DG +N+I+E+DEV++    GR G ++GDIPGVR+KVVKV+  SL  L + +KEK
Sbjct:    3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ A RK++   ++ RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG + +I+E+DEV++    GR G ++GDIPGVRFKVV V+ VSL  +   +KEKP
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G  A  +L+  R+  RW D  Y +  LG + K  P +G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:    4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34
Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+  AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRFU2.667e-3557.2530S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB2.667e-3557.2530S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_IGNH44.549e-3555.4730S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_SULAC5.941e-3554.3530S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO1.013e-3453.6230S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_HYPBU1.323e-3451.7230S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_ARCFU2.257e-3454.7430S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_METTP2.948e-3452.5530S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_METBU2.948e-3452.9030S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_METS35.029e-3454.0130S ribosomal protein S12P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionDC887584 EIC Citrus sinensis cDNA clone EIC0591 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bp
AGNGATACTNATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAG
TTCTCTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATT
AATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATC
AGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAA
GAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCT
CCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATT
TTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAGTCT
TCTTTCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAG
TTGGGCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGC
ATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATT
TCTTGTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGC
TTGCGACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGTGTTACGAAG
AGGATTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCAAGANG
ACGCCGCGAGTCCCCGGCCGTAA
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