DC887584

Overview
NameDC887584
Unique NameDC887584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:10..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34
Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G  A RKLK      RW D  Y +  LG + K  P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++  AF   DG +N+I+E+DEV I G  GR G + GDIPGVRF V KV+ VSL  +   +KEKPR
Sbjct:    4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34
Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570
            G+ A RKL+  R + RW+ + ++   L  + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL+KN K   AFVP DG + Y++E+DEV+I G  G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 75/137 (54.74%), Postives = 96/137 (70.07%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G  A RKL   R+  RW+D+ Y +  L  +E   P  G+  AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV I G  GR G + GDIPGVRF+V KV+ VSL  +   K++KP
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573
            +G+ A RKL+  R + R + + YK   L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RKC RVQL++NG+   AFVP DG +N+I+E+DEV+I G  G  G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:    8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.463e-33
Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = -2
Query:  166 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG++  AF P DG +++I+E+DEV IAG  G KG A+GD+  V +KV KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = -2
Query:  163 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573
            +G  A RKLK    R RW+D  + ++  G + K  P  G+   +GIVLEKIG+EAKQPNSAIRKC RVQLIKNG++ +AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V KV+ V L  L   +KEKPR
Sbjct:    3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = -2
Query:  163 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573
            +G  A RKL    ++ RW+DK+Y +  L  + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++  AF   DG +N+I+E+DEV I G  GR G ++GDIPGVR+ V  V+ V L  +   +KEKPR
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141          
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573
            +G  A   LK  R+  RW D SY +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRF+V  V+ VSL  +   + EKPR
Sbjct:    3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141          
The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METMJ5.029e-3455.0730S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_AERPE5.029e-3452.9030S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_UNCMA8.578e-3454.7430S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_SULSO8.578e-3452.9030S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_HALMO1.463e-3354.0130S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METHJ4.257e-3354.6830S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_METB65.560e-3352.5230S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METAC5.560e-3353.9630S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_METMA9.484e-3353.2430S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METBF9.484e-3352.5230S ribosomal protein S12P OS=Methanosarcina barke... [more]

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Properties
Property NameValue
Genbank descriptionDC887584 EIC Citrus sinensis cDNA clone EIC0591 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bp
AGNGATACTNATTTACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAAG
TTCTCTCAACAGCAATACATGATAAAGGAAAAAAGTAATCAACAGGGATT
AATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATC
AGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAA
GAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGGAATATCT
CCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATT
TTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACGAAAGCTGCAGTCT
TCTTTCCATTCTTGATCAGCTGAACTCGAGCGCATTTTCTGATAGCAGAG
TTGGGCTGCTTTGCCTCGATACCGATTTTCTCAAGAACAATGCCTTTTGC
ATGGGAAGAGCCAGCAAATGGCTTCTTCCATTCATTGCCAAGGTGGGATT
TCTTGTATGACTTATCAGCCCACCTTTGTCTTCTGCGGTGGCTCTTCAGC
TTGCGACCAGCTCCCATTCCACGTGTCTTCCCCATGTTGGTGTTACGAAG
AGGATTTTTTACTGTAACGAACGACTTTGGAGCTTGAGAGTTGCAAGANG
ACGCCGCGAGTCCCCGGCCGTAA
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