DC887584
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34 Identity = 76/138 (55.07%), Postives = 92/138 (66.67%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G A RKLK RW D Y + LG + K P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++ AF DG +N+I+E+DEV I G GR G + GDIPGVRF V KV+ VSL + +KEKPR Sbjct: 4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34 Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G+ A RKL+ R + RW+ + ++ L + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQL+KN K AFVP DG + Y++E+DEV+I G G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR Sbjct: 9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34 Identity = 75/137 (54.74%), Postives = 96/137 (70.07%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G A RKL R+ RW+D+ Y + L +E P G+ AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV I G GR G + GDIPGVRF+V KV+ VSL + K++KP Sbjct: 4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34 Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573 +G+ A RKL+ R + R + + YK L + K P G+ A+GIVLEK+GIE++QPNSA+RKC RVQL++NG+ AFVP DG +N+I+E+DEV+I G G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.463e-33 Identity = 74/137 (54.01%), Postives = 93/137 (67.88%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G A RKLK R+ RW+D Y + G E G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33 Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = -2 Query: 163 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573 +G A RKLK R RW+D + ++ G + K P G+ +GIVLEKIG+EAKQPNSAIRKC RVQLIKNG++ +AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V KV+ V L L +KEKPR Sbjct: 3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33 Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = -2 Query: 163 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573 +G A RKL ++ RW+DK+Y + L + K P G+ A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++ AF DG +N+I+E+DEV I G GR G ++GDIPGVR+ V V+ V L + +KEKPR Sbjct: 3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33 Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33 Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33 Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = -2 Query: 163 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 573 +G A LK R+ RW D SY + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRF+V V+ VSL + + EKPR Sbjct: 3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141 The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bpback to top |