DC887582

Overview
NameDC887582
Unique NameDC887582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887582_ssr413 microsatellite DC887582_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_BOVIN (40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          S  + +K ++R+K+  +   +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKR--------SKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 75/138 (54.35%), Postives = 95/138 (68.84%), Query Frame = -2
Query:  213 RKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 626
            RKTRI DVVYNASNNELVRT+TLVK++IV +DA PF+QWY  HY + +GR                          S  V++K  +RQK   ++  +E+QF +GR+LACISSRPGQCGR+DGYILEGKELEFY+KK++
Sbjct:   74 RKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKR------SEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.379e-34
Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRK+RI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY  HY + +GR                          S    +K   RQ+   ++  +EEQF  GRLLAC++SRPGQCGRADGYILEGKELEFY++K++
Sbjct:   73 TRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEDAIINKKR--------SQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIK 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = -2
Query:  213 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 629
            TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY  HY + + R                         +S+H ++K  +RQK   +D  + EQF  GRLLA ISS PGQ G+A+GYILEGKEL+FY++K++
Sbjct:   73 TRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLAR--------KKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIR 203          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.790e-31
Identity = 72/140 (51.43%), Postives = 88/140 (62.86%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRK RIL+VVYNA++N+LVRT TLVK +IVQ+DA P+KQWY  HYGV +G+                         KS  ++ KL  R K R LD  IE Q G GR  A I+SRPGQ G+ DGYILE KELEFY ++LQ+
Sbjct:   77 TRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGK----------KKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITSRPGQVGKCDGYILEAKELEFYQRRLQK 206          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 73/141 (51.77%), Postives = 88/141 (62.41%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDR-TLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+                          S     K EKR + R  LD  I+E F +GRL A I+SRPGQ GRADGY+LEGKELEFY K +Q+
Sbjct:   73 TSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK----------------KKAGDEESKFSKRHAGKQEKRCQTRLPLDEGIKELFQSGRLYASIASRPGQSGRADGYLLEGKELEFYAKAMQK 197          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8B_SCHPO (40S ribosomal protein S8-B OS=Schizosaccharomyces pombe GN=rps8b PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = -2
Query:  216 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKL 629
            ++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G                          KS HV RK   R  D  +D  +E QF AGRL A +SSRPGQ GR DGYILEG+EL FY++++
Sbjct:   73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG--------------SKGKKATATPTPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196          
The following BLAST results are available for this feature:
BLAST of DC887582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MOUSE1.517e-3451.0840S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA1.517e-3451.0840S ribosomal protein S8 OS=Macaca fascicularis GN... [more]
RS8_HUMAN1.517e-3451.0840S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]
RS8_BOVIN1.517e-3451.0840S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=... [more]
RS8_DROME1.981e-3454.3540S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_SPOFR3.379e-3453.9640S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]
RS8_CAEEL1.570e-3150.3640S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8_DICDI7.790e-3151.4340S ribosomal protein S8 OS=Dictyostelium discoide... [more]
RS8_GRIJA6.595e-3051.7740S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8B_SCHPO2.506e-2950.0040S ribosomal protein S8-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionDC887582 EIC Citrus sinensis cDNA clone EIC0589 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887582 ID=DC887582; Name=DC887582; organism=Citrus sinensis; type=EST; length=630bp
ATTGCCGGTTATCATATAGAAAACATAACAATGGTAAAGAATGTTCTCAT
TAAAAAAAAAAAAAAAATCCTAAACATATCACCCTCATGCTCTTTAATTG
TAGCCCGTCAAGGTCCCATACATAAAACAAACAAAATCAACTAAAGATCA
AAACAGACGCATGGGCAATAATGATTCTAAGCAGCGGCTCCTGCACCCTT
GCCCTTCTTTCTCTGGAGCTTCTTCATGTAAAATTCCAGCTCCTTACCTT
CTAGTATGTACCCATCAGCTCTGCCACATTGACCTGGCCGTGAAGAAATG
CAGGCCAACAACCTACCAGCACCAAATTGCTCTTCAATGTGAGGATCGAG
TGTGCGGTCCTTCTGGCGCTTTTCAAGCTTCCTAACAACATGATTGCTCT
TCTTAGTTTCTTCTGCTGCTGCTGCTGCACCTTCTCCCTCCTCTGTGGTT
TCCTTCTTGGTAACTGCCTTCTTCTTCCTACCAATGTCAACGCCATAGTG
CTGAAGGTACCATTGCTTAAAAGGCGCTGCATCCACTTGCACAATGGCAC
TCTTCACCAGAGTTTGAGTCCTGACGAGCTCATTATTAGAGGCATTGTAA
ACAACATCCAGGATACGGGTCTTGCGGGTG
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