DC887582

Overview
NameDC887582
Unique NameDC887582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887582_ssr413 microsatellite DC887582_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8A_SCHPO (40S ribosomal protein S8-A OS=Schizosaccharomyces pombe GN=rps8a PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = -2
Query:  216 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKL 629
            ++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G                          KS HV RK   R  D  +D  +E QF AGRL A +SSRPGQ GR DGYILEG+EL FY++++
Sbjct:   73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG--------------SKGKKATSTPNPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 67/138 (48.55%), Postives = 84/138 (60.87%), Query Frame = -2
Query:  216 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKL 629
            ++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG  +G+                         KS +  RK   R     ++  +E QF AGRL ACISSRPGQ GR DGYILEG+EL FY+++L
Sbjct:   73 SKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGK--------------KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRL 196          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPH-IEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+                                  +  +K   L P  + +QF +GRLLACISSRPGQCGR DGY+LEG+EL FY +++ +
Sbjct:   73 TRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGKSSEDP-----------------------------QASEKVAALVPRTLLDQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDK 184          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.061e-28
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  210 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 629
            TRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYGV++                            S  V   + K          + EQF +GRLLACISSRPGQCGR DGY+LEG+EL FY +++ +
Sbjct:   73 TRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL-----------------------EDPQASEKVAGLVPKT---------LLEQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDK 180          
BLAST of DC887582 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = -2
Query:  210 KTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI-----GRXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 623
            + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+D+                                 S  + R+  +R+++  ++  I +Q   GR+LA I+SRPGQ GRADG +LEG EL+FY+K+L++
Sbjct:   75 RVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGILLEGAELQFYLKRLEK 217          
The following BLAST results are available for this feature:
BLAST of DC887582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8A_SCHPO2.506e-2950.0040S ribosomal protein S8-A OS=Schizosaccharomyces ... [more]
RS8_YEAST9.523e-2948.5540S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_THEPA9.523e-2946.8140S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_THEAN8.061e-2847.8640S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_LEIMA1.986e-2643.3640S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionDC887582 EIC Citrus sinensis cDNA clone EIC0589 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887582 ID=DC887582; Name=DC887582; organism=Citrus sinensis; type=EST; length=630bp
ATTGCCGGTTATCATATAGAAAACATAACAATGGTAAAGAATGTTCTCAT
TAAAAAAAAAAAAAAAATCCTAAACATATCACCCTCATGCTCTTTAATTG
TAGCCCGTCAAGGTCCCATACATAAAACAAACAAAATCAACTAAAGATCA
AAACAGACGCATGGGCAATAATGATTCTAAGCAGCGGCTCCTGCACCCTT
GCCCTTCTTTCTCTGGAGCTTCTTCATGTAAAATTCCAGCTCCTTACCTT
CTAGTATGTACCCATCAGCTCTGCCACATTGACCTGGCCGTGAAGAAATG
CAGGCCAACAACCTACCAGCACCAAATTGCTCTTCAATGTGAGGATCGAG
TGTGCGGTCCTTCTGGCGCTTTTCAAGCTTCCTAACAACATGATTGCTCT
TCTTAGTTTCTTCTGCTGCTGCTGCTGCACCTTCTCCCTCCTCTGTGGTT
TCCTTCTTGGTAACTGCCTTCTTCTTCCTACCAATGTCAACGCCATAGTG
CTGAAGGTACCATTGCTTAAAAGGCGCTGCATCCACTTGCACAATGGCAC
TCTTCACCAGAGTTTGAGTCCTGACGAGCTCATTATTAGAGGCATTGTAA
ACAACATCCAGGATACGGGTCTTGCGGGTG
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