CN184937

Overview
NameCN184937
Unique NameCN184937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_MOUSE (RNA-binding protein PNO1 OS=Mus musculus GN=Pno1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.688e-57
Identity = 106/187 (56.68%), Postives = 144/187 (77.01%), Query Frame = 3
Query:  165 QLQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            ++  E      +P+F PL   ++  G+ + RK+ V  +RY+PLK+ WM+I+TPI E + + IR NLK+R VE++T  DT D+S L K ADFV AF+LGF V DA+AL+RLD+L++ESFEI DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+AD  +HILGSF NIK+AR ++C+LILG+
Sbjct:   42 RMDTEEARPAKRPVFPPLSGDQLLTGKEETRKIPVPGNRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKDTKDVSALTKAADFVKAFVLGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVHVHILGSFQNIKMARTAICNLILGN 228          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_HUMAN (RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 106/187 (56.68%), Postives = 144/187 (77.01%), Query Frame = 3
Query:  165 QLQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            ++  E      +P+F PL    +  G+ + RK+ V  +RY+PLK+ WM+I+TPI E + + IR NLK+R VE++T  +T D+S L K ADFV AF+LGF V DA+AL+RLD+L++ESFEI DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+AD K+HILGSF NIK+AR ++C+LILG+
Sbjct:   46 RMDTEEARPAKRPVFPPLCGDGLLSGKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGN 232          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_COCIM (Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis GN=PNO1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.217e-57
Identity = 110/176 (62.50%), Postives = 138/176 (78.41%), Query Frame = 3
Query:  198 KPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +PLF P+ A +    R++ RKV V PHR SPLK  W +IY P+ E +K+ +RMN+K++ VEL+T  +T D   LQK  DF+ AF LGFDV DAIALLRLD+LYIE+FEIKDVK L GEHL RAIGR++GK GKTKFAIENA++TR+V+AD KIHILG F NI+IAR+++ SLILGS
Sbjct:   61 RPLFTPITATD-GAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQVRMNIKSKAVELRTSKNTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKPLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAIVSLILGS 235          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_BOVIN (RNA-binding protein PNO1 OS=Bos taurus GN=PNO1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.402e-56
Identity = 105/186 (56.45%), Postives = 142/186 (76.34%), Query Frame = 3
Query:  168 LQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +  E      +P+F PL       G+ + RK+ V  +RY+PLK+ W++I+TPI E + + IR NLK+R VE++T  +T D+S L K ADFV AF+LGF V DA+AL+RLD+L++ESFEI DVK L+G+HLSRAIGR++GKGGKTKF IEN T+TRIV+AD K+HILGSF NIK+AR ++C+LILG+
Sbjct:   47 MDTEEARPAKRPVFPPLSGDGFLSGKEETRKIPVPANRYTPLKENWLKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGN 232          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_SCHPO (Pre-rRNA-processing protein pno1 OS=Schizosaccharomyces pombe GN=rbp28 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.956e-56
Identity = 107/177 (60.45%), Postives = 138/177 (77.97%), Query Frame = 3
Query:  201 PLFGPLK--AHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            P F P K  A +  G + Q R+V + PHR +PL+ +W ++Y P+ E + + +RMN K+R VEL+    T D   LQK  DFV AF LGFD+ DAIALLRLD+LYI++FEIKDVKTL+G+HLSRAIGR++G+GGKTKFAIENA++TRIV+ADSKIHILG F NI+IA+D++ SLILGS
Sbjct:   45 PKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGALQKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTKFAIENASRTRIVLADSKIHILGGFTNIRIAKDAVVSLILGS 221          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_DEBHA (Pre-rRNA-processing protein PNO1 OS=Debaryomyces hansenii GN=PNO1 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.956e-56
Identity = 115/186 (61.83%), Postives = 143/186 (76.88%), Query Frame = 3
Query:  174 NESGSLPPKPLFGPLKAHEMSGGRVQF--RKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +ESG    KP F    A   SG +V+   RKV V PHR +PLK  W +IY P+ + +K+ +RMNLK + +E+KT  +T D   LQK ADFV AF LGFDV DAIALLRLD+LYIE+FE+KDVKTL G+HLSRAIGR++GK GKTKFAIENAT+TRIV+ADSKIHILG F +I++AR+++ SLILGS
Sbjct:   57 DESG----KPKFS---AASKSGMKVKLESRKVPVPPHRMTPLKNTWTKIYPPLVDHLKLQVRMNLKTKTIEMKTNKNTVDQGALQKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLNGDHLSRAIGRIAGKDGKTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAVVSLILGS 235          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_PHANO (Pre-rRNA-processing protein PNO1 OS=Phaeosphaeria nodorum GN=PNO1 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.643e-55
Identity = 110/185 (59.46%), Postives = 140/185 (75.68%), Query Frame = 3
Query:  168 LQNESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILG 722
            + +ESG    +P F P K+  ++    Q RKV + PHR +PLK  W +IY P+ E +K+ +RMN+K + VEL+T   T D   LQK  DFV AF LGFDV DAIALLRLD+LYIE+FEIKDVKTL+GEH+ RAIGR++GK GKTKFAIENA++TR+V+ADSKIHILG F NI +AR+++ SLILG
Sbjct:   62 MTDESG----RPKFAPAKSIPLAFRHEQ-RKVPIPPHRMTPLKTAWPKIYPPLVEHLKLQVRMNIKTKSVELRTSKSTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTLQGEHMGRAIGRIAGKDGKTKFAIENASRTRVVLADSKIHILGGFKNIHVAREAIVSLILG 241          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_CANGA (Pre-rRNA-processing protein PNO1 OS=Candida glabrata GN=PNO1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.509e-55
Identity = 111/185 (60.00%), Postives = 142/185 (76.76%), Query Frame = 3
Query:  174 NESGSLPPKPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRAD-TPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            +ESG    KP FG  K    +  +++ RKV V PHR +PL+  W +IY P+ + +K+ +RMNLK R VEL+T    T D   LQK ADF+ AF LGFD+ D+IALLRLD+LYIE+FE+KDVKTL G+HLSRAIGR++GK GKTKFAIENAT+TRIV+ADSKIHILG F +I++AR+++ SLILGS
Sbjct:   61 DESG----KPRFGAAKDQATTKVKLESRKVPVPPHRMTPLRNSWNKIYPPLVDHLKLQVRMNLKTRTVELRTHPKHTTDPGALQKGADFIKAFTLGFDLDDSIALLRLDDLYIETFEVKDVKTLTGDHLSRAIGRIAGKDGKTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAVVSLILGS 241          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_KLULA (Pre-rRNA-processing protein PNO1 OS=Kluyveromyces lactis GN=PNO1 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.004e-54
Identity = 108/177 (61.02%), Postives = 139/177 (78.53%), Query Frame = 3
Query:  198 KPLFGPLKAHEMSGGRVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRAD-TPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            KP F    +   +  +++ RKV+V PHR +PLK  W +IY P+ + +K+ +RMNLK + VEL+T    T D   LQK ADF+ AF LGFD+ D+IALLRLD+LYIE+FEIKDVKTL+G+HLSRAIGR++GK GKTKFAIENAT+TRIV+ADSKIHILG F +I++AR+S+ SLILGS
Sbjct:   78 KPRFTSAASSAQTKVKLESRKVSVPPHRMTPLKNNWSKIYPPLVDHLKLQVRMNLKTKSVELRTHPKHTTDPGALQKGADFIKAFTLGFDLDDSIALLRLDDLYIETFEIKDVKTLQGDHLSRAIGRIAGKDGKTKFAIENATRTRIVLADSKIHILGGFTHIRMARESVVSLILGS 254          
BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_YARLI (Pre-rRNA-processing protein PNO1 OS=Yarrowia lipolytica GN=PNO1 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.312e-54
Identity = 102/156 (65.38%), Postives = 132/156 (84.62%), Query Frame = 3
Query:  258 KVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            KV + PHR +PLK  WM+IY P+ EQ+K+ +RMN + +++EL+T ++T D S LQK  DFV AF LGFDV DA+A++RLDELY+E+FEIKDVKTL+G+HL RAIGR++GK GKTKFAIENA++TR+V+ADSKIHILG F NIKIAR+++ SLILGS
Sbjct:   83 KVPIPPHRMAPLKNEWMKIYPPLVEQLKLQVRMNPRKKQLELRTCSNTVDNSALQKGTDFVRAFTLGFDVDDAMAIIRLDELYVETFEIKDVKTLQGDHLGRAIGRIAGKDGKTKFAIENASRTRVVLADSKIHILGGFTNIKIAREAIVSLILGS 238          
The following BLAST results are available for this feature:
BLAST of CN184937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PNO1_MOUSE3.688e-5756.68RNA-binding protein PNO1 OS=Mus musculus GN=Pno1 P... [more]
PNO1_HUMAN6.291e-5756.68RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 P... [more]
PNO1_COCIM8.217e-5762.50Pre-rRNA-processing protein PNO1 OS=Coccidioides i... [more]
PNO1_BOVIN1.402e-5656.45RNA-binding protein PNO1 OS=Bos taurus GN=PNO1 PE=... [more]
PNO1_SCHPO6.956e-5660.45Pre-rRNA-processing protein pno1 OS=Schizosaccharo... [more]
PNO1_DEBHA6.956e-5661.83Pre-rRNA-processing protein PNO1 OS=Debaryomyces h... [more]
PNO1_PHANO2.643e-5559.46Pre-rRNA-processing protein PNO1 OS=Phaeosphaeria ... [more]
PNO1_CANGA4.509e-5560.00Pre-rRNA-processing protein PNO1 OS=Candida glabra... [more]
PNO1_KLULA1.004e-5461.02Pre-rRNA-processing protein PNO1 OS=Kluyveromyces ... [more]
PNO1_YARLI1.312e-5465.38Pre-rRNA-processing protein PNO1 OS=Yarrowia lipol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184937 ID=CN184937; Name=CN184937; organism=Citrus sinensis; type=EST; length=727bp
CTATGTAGGATCCCCCCGGGCTGCAGGTTTTCTTCTCTTGAACCTCTCAT
CACAGTCACACTAAGCTCTAGCCGACATAGAGATCAGGGAGAGAAGACAG
CTCGTATCTGATCTTGTGGTTGTTCACAATGCAGACTTCCATGGACATTG
AAACAGTTCCATCTCAACTGCAAAATGAATCCGGGTCTCTGCCACCAAAG
CCCCTGTTTGGGCCATTGAAGGCTCATGAAATGTCTGGTGGTCGAGTTCA
GTTTCGGAAGGTCAATGTTACACCTCATCGGTACTCGCCTCTCAAGAAAA
TATGGATGGAAATATACACTCCAATTTATGAGCAGATGAAGATTGACATC
CGTATGAACCTCAAGGCTCGTAGGGTTGAATTGAAGACTAGAGCAGACAC
ACCCGACATAAGTAATCTACAGAAGTGTGCGGATTTTGTTCATGCATTCA
TGCTTGGTTTTGATGTTATCGATGCCATTGCACTTTTGCGTTTGGATGAG
CTGTATATAGAATCTTTTGAGATCAAGGATGTTAAGACACTAAGAGGTGA
GCATTTGTCACGTGCCATAGGAAGATTATCTGGTAAAGGTGGCAAAACAA
AGTTTGCTATCGAGAATGCCACAAAAACAAGGATTGTGATTGCAGATTCG
AAAATTCACATACTAGGATCCTTTGCCAATATTAAAATTGCAAGGGATTC
CCTTTGTAGTCTCATCTTAGGATCTCC
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