CN184937

Overview
NameCN184937
Unique NameCN184937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184937 vs. ExPASy Swiss-Prot
Match: PNO1_ASPFU (Pre-rRNA-processing protein pno1 OS=Aspergillus fumigatus GN=pno1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.236e-49
Identity = 100/162 (61.73%), Postives = 126/162 (77.78%), Query Frame = 3 
Query:  243 RVQFRKVNVTPHRYSPLKKIWMEIYTPIYEQMKIDIRMNLKARRVELKTRADTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVK-TLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFANIKIARDSLCSLILGS 725
            RV+ RKV V PHR +PLK  W +IY P+ E +K+ +RMN+K R VEL+T   T D   LQK  DFV AF LGFDV DAIALLRLD+LYI SFEI+DVK +L GEHLSRAIGR++GK GKTKFAIENA++TR+V+  +K+ ILG F ++ IA++++ SLILGS
Sbjct:   71 RVETRKVPVPPHRMTPLKANWPKIYPPLVEHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKVTILGRFRDLGIAQEAIVSLILGS 232
The following BLAST results are available for this feature:
BLAST of CN184937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PNO1_ASPFU8.236e-4961.73Pre-rRNA-processing protein pno1 OS=Aspergillus fu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184937 ID=CN184937; Name=CN184937; organism=Citrus sinensis; type=EST; length=727bp
CTATGTAGGATCCCCCCGGGCTGCAGGTTTTCTTCTCTTGAACCTCTCAT
CACAGTCACACTAAGCTCTAGCCGACATAGAGATCAGGGAGAGAAGACAG
CTCGTATCTGATCTTGTGGTTGTTCACAATGCAGACTTCCATGGACATTG
AAACAGTTCCATCTCAACTGCAAAATGAATCCGGGTCTCTGCCACCAAAG
CCCCTGTTTGGGCCATTGAAGGCTCATGAAATGTCTGGTGGTCGAGTTCA
GTTTCGGAAGGTCAATGTTACACCTCATCGGTACTCGCCTCTCAAGAAAA
TATGGATGGAAATATACACTCCAATTTATGAGCAGATGAAGATTGACATC
CGTATGAACCTCAAGGCTCGTAGGGTTGAATTGAAGACTAGAGCAGACAC
ACCCGACATAAGTAATCTACAGAAGTGTGCGGATTTTGTTCATGCATTCA
TGCTTGGTTTTGATGTTATCGATGCCATTGCACTTTTGCGTTTGGATGAG
CTGTATATAGAATCTTTTGAGATCAAGGATGTTAAGACACTAAGAGGTGA
GCATTTGTCACGTGCCATAGGAAGATTATCTGGTAAAGGTGGCAAAACAA
AGTTTGCTATCGAGAATGCCACAAAAACAAGGATTGTGATTGCAGATTCG
AAAATTCACATACTAGGATCCTTTGCCAATATTAAAATTGCAAGGGATTC
CCTTTGTAGTCTCATCTTAGGATCTCC
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