CN184935
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20 Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RVDK+ L+ G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L + ++GP+L+I PLSTLSNW E + Sbjct: 733 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 816
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20 Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1 Query: 304 ENVSKNEAHLNDLQFNKLDELLTQTQMY----AEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858 + +S+ + L+ KL+E + Q+Q+Y A+ LL + ++ + S ++ + T+K +++ + K K+ R LL LK YQL+G+ WLI+L++NGLNGILAD+MGLGKT+Q+IA LA + GP+LV APLSTL NW+NE ++ Sbjct: 116 DELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLLHRSNEVANANTKDNSNS-------DDEEHSSKKRKTKK--KSITDFFKKQKKNEDTTTQNGAPDDAAIKQPR----LLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLSTLDNWMNEFAK 291
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20 Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RV+K+ LL G LK YQL+G++W++SL+ N LNGILAD+MGLGKTIQTIA + +L + L+GPYL+I PLSTLSNW E + Sbjct: 716 RVEKQSA----LLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDK 799
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20 Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 RV+K+ LL G LK YQL+G++W++SL+ N LNGILAD+MGLGKTIQTIA + +L + L+GPYL+I PLSTLSNW E + Sbjct: 711 RVEKQSA----LLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDK 794
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20 Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 1 Query: 298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEK-----MEDITVNGVEQESEP---VXXXXXXXXXXXAAP-------QCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQREL--------------VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858 E+E SK +A KL+ LLTQT++Y+ F+ K +E V+ + ES+ + A Q R A+ A A+ TR+K ++E+ EL P + LK YQLKG+ WL +L+ G+NGILAD+MGLGKT+Q+I+ LAHL N + GP+LV+ P STL NWVNEIS+ Sbjct: 575 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTNELEGNNVSNNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRAKAKQFDDHANAHGE---EEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISK 782
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.806e-20 Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 1 Query: 295 VEQENVSKNEAHLNDL-QFNKLDELLTQTQMYAEFLLEKM-----------------EDITVNGVEQES-EPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQR----ELV---PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 V E K E ++ Q KL+ LLTQT++Y+ F+ K+ ED +N ++ +S V RKA + + +L +S+ ++ + E+V P + LK YQLKG+ WL +L+ G+NGILAD+MGLGKT+Q+I+ LAHL + + GP+LV+ P STL NWVNEIS+ Sbjct: 656 VAMEQARKEEEDRENVRQAKKLNFLLTQTELYSHFIGSKIKTNELEGNMKDDEFDENEDNLMNNIDLDSTSSVKTDFKTIDFDNEDDDELRRKAAQNASNVLQKSREKTKKFDNDTSNGEELNFQNPTSLGEVVIEQPSILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISK 870
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20 Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 P + GKLK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+IA LAHL + + GP+L+I+P STL+NW E +R Sbjct: 513 PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTR 590
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20 Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 P + GKLK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+IA LAHL + + GP+L+I+P STL+NW E +R Sbjct: 511 PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTR 588
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20 Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858 GG L+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTIA L +LK + GP++V+ P STL NW+NE R Sbjct: 184 GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKR 257
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20 Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858 GG L+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTIA L +LK + GP++V+ P STL NW+NE R Sbjct: 180 GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKR 253 The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bpback to top |