CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.645e-20
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RVDK+      L+  G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTIA + +L +   ++GP+L+I PLSTLSNW  E  +
Sbjct:  733 RVDKQSA----LMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDK 816          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query:  304 ENVSKNEAHLNDLQFNKLDELLTQTQMY----AEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            + +S+ +     L+  KL+E + Q+Q+Y    A+ LL +  ++     +  S              ++ +  T+K  +++     + K                 K+ R    LL    LK YQL+G+ WLI+L++NGLNGILAD+MGLGKT+Q+IA LA +      GP+LV APLSTL NW+NE ++
Sbjct:  116 DELSEMDTKTVSLKLKKLNEFVRQSQVYSSIIADTLLHRSNEVANANTKDNSNS-------DDEEHSSKKRKTKK--KSITDFFKKQKKNEDTTTQNGAPDDAAIKQPR----LLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLSTLDNWMNEFAK 291          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RV+K+      LL  G LK YQL+G++W++SL+ N LNGILAD+MGLGKTIQTIA + +L +   L+GPYL+I PLSTLSNW  E  +
Sbjct:  716 RVEKQSA----LLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDK 799          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            RV+K+      LL  G LK YQL+G++W++SL+ N LNGILAD+MGLGKTIQTIA + +L +   L+GPYL+I PLSTLSNW  E  +
Sbjct:  711 RVEKQSA----LLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDK 794          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEK-----MEDITVNGVEQESEP---VXXXXXXXXXXXAAP-------QCNTRKAKRAVAAML-TRSKXXXXXXXXXXXXXXRVDKEQREL--------------VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            E+E  SK +A        KL+ LLTQT++Y+ F+  K     +E   V+  + ES+    +           A         Q   R A+ A  A+  TR+K                ++E+ EL               P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL  N  + GP+LV+ P STL NWVNEIS+
Sbjct:  575 EEEKESKRQA-------KKLNFLLTQTELYSHFIGRKIKTNELEGNNVSNNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRAKAKQFDDHANAHGE---EEEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISK 782          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_VANPO (Putative DNA helicase INO80 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=INO80 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.806e-20
Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  295 VEQENVSKNEAHLNDL-QFNKLDELLTQTQMYAEFLLEKM-----------------EDITVNGVEQES-EPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQR----ELV---PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            V  E   K E    ++ Q  KL+ LLTQT++Y+ F+  K+                 ED  +N ++ +S   V                  RKA +  + +L +S+               ++ +      E+V   P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL +   + GP+LV+ P STL NWVNEIS+
Sbjct:  656 VAMEQARKEEEDRENVRQAKKLNFLLTQTELYSHFIGSKIKTNELEGNMKDDEFDENEDNLMNNIDLDSTSSVKTDFKTIDFDNEDDDELRRKAAQNASNVLQKSREKTKKFDNDTSNGEELNFQNPTSLGEVVIEQPSILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEKYNIWGPFLVVTPASTLHNWVNEISK 870          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +  GKLK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+IA LAHL +   + GP+L+I+P STL+NW  E +R
Sbjct:  513 PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTR 590          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +  GKLK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+IA LAHL +   + GP+L+I+P STL+NW  E +R
Sbjct:  511 PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTR 588          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            GG L+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTIA L +LK    + GP++V+ P STL NW+NE  R
Sbjct:  184 GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKR 257          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            GG L+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTIA L +LK    + GP++V+ P STL NW+NE  R
Sbjct:  180 GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKR 253          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SMCA4_BOVIN1.645e-2055.68Transcription activator BRG1 OS=Bos taurus GN=SMAR... [more]
YFK8_YEAST2.148e-2033.33Uncharacterized ATP-dependent helicase YFR038W OS=... [more]
SMCA2_MOUSE2.148e-2056.82Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN2.148e-2056.82Probable global transcription activator SNF2L2 OS=... [more]
INO80_YEAS72.148e-2035.32Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_VANPO2.806e-2033.49Putative DNA helicase INO80 OS=Vanderwaltozyma pol... [more]
INO80_MOUSE3.664e-2057.69Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
INO80_HUMAN3.664e-2057.69Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
SMCA1_MOUSE8.164e-2059.46Probable global transcription activator SNF2L1 OS=... [more]
SMCA1_HUMAN8.164e-2059.46Probable global transcription activator SNF2L1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
back to top