CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  628 PLLTGGK---LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNE 849
            P   GG+   L+ YQL+G+ WL   W    + ILAD+MGLGKTIQTI+FL++L   + L+GP+L++ PLSTL++W  E
Sbjct:  474 PAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQRE 551          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.142e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TGG L  YQ++G+ WL   W  G + ILAD+MGLGKT+QT  FL  L   G   GP+LV APLST+ NW  E
Sbjct:  715 TGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.142e-13
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TGG L  YQ++G+ WL   W  G + ILAD+MGLGKT+QT  FL  L   G   GP+LV APLST+ NW  E
Sbjct:  722 TGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.491e-13
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  601 VDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            +D++    +P +    L+ YQ  G+ WL+ L++N +NGILAD+MGLGKT+Q I+ L++L     + GP+LVI P S L NW  E+ R
Sbjct:  646 MDEKHLTKIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKR 732          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEI 852
            G KL  +Q++GV WL   W  G+  ILAD+MGLGKTIQT+ FL  L K     GP+L+  PLSTL+NW  E+
Sbjct:  264 GLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWEREL 335          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1L_HUMAN (Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            LTG  L+SYQL+GV WL   +  QNG   IL D+MGLGKT QTIA   +L G     GP+L++ PLS LSNW  E+ R
Sbjct:   41 LTGIHLRSYQLEGVNWLAQRFHCQNGC--ILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQR 116          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            L+ YQL GVKWL    +N    IL D+MGLGKT QTI+ LA+ +G+  ++GP+LV+ PL+ L NW  E+ R
Sbjct:   35 LRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLAYARGSLKMNGPFLVLCPLAVLENWRQELER 105          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: EP400_HUMAN (E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            RV    +   P L  G L+ YQ  G+ WL  L++  LNGILAD+ GLGKT+Q IAF AHL  N G  GP+LV+     +  W  E+ R
Sbjct: 1074 RVTTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKR 1161          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: EP400_MOUSE (E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  598 RVDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            RV    +   P L  G L+ YQ  G+ WL  L++  LNGILAD+ GLGKT+Q IAF AHL  N G  GP+LV+     +  W  E+ R
Sbjct: 1073 RVTTAVKFSAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVMRSCNILKWELELKR 1160          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.153e-12
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            LTG  L+ YQL+GV WL   +  QNG   IL D+MGLGKT QTIA   +L G     GP+L++ PLS LSNW  E+ R
Sbjct:   43 LTGIHLRPYQLQGVNWLAQCFHCQNGC--ILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMER 118          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
CHD2_HUMAN8.742e-1450.00Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
CHD4_MOUSE1.142e-1354.17Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN1.142e-1354.17Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
HEPF1_PLAF71.491e-1343.68Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
CHD3_DROME2.544e-1352.78Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
CHD1L_HUMAN7.401e-1353.85Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHD1L_DANRE1.262e-1250.70Chromodomain-helicase-DNA-binding protein 1-like O... [more]
EP400_HUMAN1.649e-1245.45E1A-binding protein p400 OS=Homo sapiens GN=EP400 ... [more]
EP400_MOUSE2.153e-1245.45E1A-binding protein p400 OS=Mus musculus GN=Ep400 ... [more]
CHD1L_BOVIN2.153e-1252.56Chromodomain-helicase-DNA-binding protein 1-like O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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