CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNE 849
            L +G  L+ YQ+ G+ WL+  W    + ILAD+MGLGKTIQTI FL  L K + L+GP+L + PLST++ W  E
Sbjct:  522 LSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQRE 595          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.797e-12
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  643 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLH-GPYLVIAPLSTLSNWVNEI 852
            G L+ YQ  G+ WL+ L ++G    LAD MGLGKTIQ IA+  H+K +G    P+L+IAP S L NW  E+
Sbjct:  448 GTLRPYQKYGMNWLLFLRESGFGACLADDMGLGKTIQMIAYFLHVKESGRQKTPHLIIAPTSVLGNWQREL 518          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  604 DKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            D +Q +  P    G L  YQL+G+ +L   W    + ILAD+MGLGKTIQ+IA LA L    L  P+LVIAPLSTL NW  E +
Sbjct:  258 DFQQFDHTPEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI-PHLVIAPLSTLRNWEREFA 340          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.927e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            L +YQ   V+WL  L+Q    GI+ D+MGLGKTIQ IAF+A L  +G L GP L++ P + +  W NE
Sbjct:  297 LFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPATVMKQWCNE 364          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: MIT1_SCHPO (Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe GN=mit1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            + GG L  YQLKG+ WL   W      ILAD+MGLGKT+Q I+F++ L       P LVI P +T++NW  E+ +
Sbjct:  551 IKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHATVANWERELKK 625          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
CHD1_DROME3.673e-1250.00Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
YWQA_BACSU4.797e-1249.30Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]
PKL_ARATH6.265e-1250.00CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
RAD26_YEAST6.927e-1148.53DNA repair and recombination protein RAD26 OS=Sacc... [more]
MIT1_SCHPO9.047e-1145.33Chromatin remodeling factor mit1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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