CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.066e-19
Identity = 68/210 (32.38%), Postives = 104/210 (49.52%), Query Frame = 1
Query:  298 EQENVSKNEAHLNDL--QFNKLDELLTQTQMYAEFLLEKM----EDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELV----------------PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            E E   K +  L ++  Q  KL+ L+TQT++YA F+ +K+    E+  +  + Q  E             A  +      + A AAM                     +++ +E V                P +  G LK YQ+KG+ WL +++  G++GILAD+MGLGKT+Q+IAFL H+  + G+ GP+LVI+P STL NW  E+SR
Sbjct:  397 EAEEQRKQDVELIEVKRQQRKLNFLITQTELYAHFMSKKLGQGSEEDQLRILSQLDEETNARLAAQDDYDAG-EMKLLAQENAEAAMQRDLDKTRAFDVFAKKKEKEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSR 605          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.392e-19
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P    GK++ YQL G+ WLI L++NG+NGILAD+MGLGKT+QTI+ L +L +  G+ GP++V+AP STL NW+ EI R
Sbjct:  224 PSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQR 301          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_KLULA (Putative DNA helicase INO80 OS=Kluyveromyces lactis GN=INO80 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.375e-19
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL     + GP++V+ P STL NWVNEISR
Sbjct:  739 PKMLACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLADRYNIWGPFIVVTPASTLHNWVNEISR 816          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.102e-19
Identity = 46/87 (52.87%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  601 VDKEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            VD EQ    P +   +LK YQLKG+ WL++L++ G+NGILAD+MGLGKT+Q+I+ +A+L + +G+ GP+LV+AP STL NW  EI++
Sbjct:  829 VDIEQ----PKMLQAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHGIWGPFLVVAPASTLHNWQQEITK 911          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.052e-19
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  619 ELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            E   ++  G LK YQ+KG++WL+SL+ N LNGILAD+MGLGKTIQTI+ + +L     + GPYL+I PLSTL NWV E  +
Sbjct:  763 EQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEK 843          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.291e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  791 PTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 868          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.291e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  626 PTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 703          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.911e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  826 PKMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 903          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.911e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  811 PSMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 888          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.911e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  826 PKMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 903          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
INO80_DROME1.066e-1932.38Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
ISW2_ORYSJ1.392e-1956.41Probable chromatin-remodeling complex ATPase chain... [more]
INO80_KLULA2.375e-1957.69Putative DNA helicase INO80 OS=Kluyveromyces lacti... [more]
INO80_SCLS13.102e-1952.87Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
BRM_DROME4.052e-1955.56ATP-dependent helicase brm OS=Drosophila melanogas... [more]
INO80_EMENI5.291e-1956.41Putative DNA helicase ino80 OS=Emericella nidulans... [more]
INO80_ASPOR5.291e-1956.41Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_NEOFI6.911e-1956.41Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_ASPTN6.911e-1956.41Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPFU6.911e-1956.41Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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