CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  313 SKNEAHLNDL--QFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAV------AAMLTRSKXXXXXXXXXXXXXXRVDKEQRELV-------PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            +K E  L +   Q  KLD L+TQT++Y+ F+  KM+          +  V              +     A+ AV      + +   ++               ++ +   LV       P +   KLK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ +A+L + + + GP+LVIAP STL NW  EI+R
Sbjct:  715 AKKEEELRESRRQARKLDFLITQTELYSHFVGRKMDREQDLPSATNTASVSEINFDSDEEEDIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDMNEGEMNFQNPTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHNWQQEITR 912          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  816 PNMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 893          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASPCL (Putative DNA helicase ino80 OS=Aspergillus clavatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   KLK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LVIAP STL NW  EI++
Sbjct:  828 PNMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITK 905          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            TGG ++ YQ++G++WL  LW+NG+NGILAD+MGLGKT+Q IA +A +   G+ GP+LV  PLSTL NW+ E  R
Sbjct:  202 TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKR 275          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            TGG ++ YQ++G++WL  LW+NG+NGILAD+MGLGKT+Q IA +A +   G+ GP+LV  PLSTL NW+ E  R
Sbjct:  219 TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKR 292          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 41/73 (56.16%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  643 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            GKL+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTI+ L ++K    + GP++V+ P STL NW++E  R
Sbjct:  178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKR 250          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            +  G+++ YQ++G+ W+ISL++NG+NGILAD+MGLGKT+QTI+ L +LK      GP++VI P STL NWVNE  +
Sbjct:  123 IKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKK 198          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 42/78 (53.85%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L   +LK YQLKG+ WL++L++ G+NGILAD+MGLGKT+Q+I+ +A+L + + + GP+LV+AP STL NW  EI++
Sbjct: 1038 PKLINAQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHNWQQEIAK 1115          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 68/217 (31.34%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  313 SKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKM-------------EDITVNGVEQ-----ESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELV----------------PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            ++ EA     Q  KL+ LLTQT++Y+ F+ +K+             E+    G+E+     + EP+              +   R A+ A+ A   +++                D    + +                P +   +LK YQLKG+ WL +L++ G+NGILAD+MGLGKTIQ+I+ LA+L + + L GP+LVIAP STL NW  E++R
Sbjct:  725 AEEEARETKRQSRKLNFLLTQTELYSHFIGKKIKTKEAEAAEGMDVEEEEKRGMEEIAIGEDGEPLPDLDYDEDDEENLRKHAARGAQAAIQAARDKARAFDDSIVGRGAPLPGDDTMDGDELNFQNPSLGENSVTITQPKMLMAQLKEYQLKGLTWLGNLYEQGINGILADEMGLGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELAR 941          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.540e-18
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L    LK YQLKG+ WL++L++ G+NGILAD+MGLGKTIQ+I+ +A+L + + + GP+LV+AP STL NW  EI R
Sbjct: 1071 PKLLTATLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEHHDIWGPFLVVAPASTLHNWEQEIKR 1148          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
INO80_SCHPO9.026e-1932.83Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
INO80_ASPNC9.026e-1956.41Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_ASPCL9.026e-1956.41Putative DNA helicase ino80 OS=Aspergillus clavatu... [more]
HELLS_MOUSE9.026e-1956.76Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
HELLS_HUMAN9.026e-1956.76Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
SMCA5_HUMAN1.179e-1856.16SWI/SNF-related matrix-associated actin-dependent ... [more]
ISWI_DROME1.179e-1853.95Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
INO80_GIBZE1.179e-1853.85Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
INO80_CRYNE1.179e-1831.34Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
INO80_MAGGR1.540e-1856.41Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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