CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.011e-18
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            P    G+L+ YQ++GV WL+SL +N + GILAD+MGLGKT+QTI+FL +L+    + GP+LVIAP STL+NW+ EI+R
Sbjct:  189 PAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINR 266          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.011e-18
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +    LK YQLKG+ WL +L+  G+NGILAD+MGLGKT+Q+I+ LAHL +   + GP++V+ P STL NWVNEI +
Sbjct:  648 PKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAERYNIWGPFIVVTPASTLHNWVNEIQK 725          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.626e-18
Identity = 40/73 (54.79%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  643 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            GKL+ YQ++G+ WLISL++NG+NGILAD+MGLGKT+QTI+ L ++K    + GP++V+ P STL NW++E  +
Sbjct:  177 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKK 249          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_RAT (Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            +L+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+IAFL  +   G+HGP+LVIAPLST++NW  E +
Sbjct:  810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN 879          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_MOUSE (Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            +L+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+IAFL  +   G+HGP+LVIAPLST++NW  E +
Sbjct:  812 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN 881          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_HUMAN (Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            +L+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+IAFL  +   G+HGP+LVIAPLST++NW  E +
Sbjct:  810 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFN 879          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_PHANO (Putative DNA helicase INO80 OS=Phaeosphaeria nodorum GN=INO80 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L    LK YQLKG+ WL++L++ G+NGILAD+MGLGKT+Q+I+ +A+L +   + GP+LVIAP STL NW  EI++
Sbjct:  814 PKLLNCTLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAERYNIWGPFLVIAPASTLHNWQQEIAK 891          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_NEUCR (Putative DNA helicase ino-80 OS=Neurospora crassa GN=ino-80 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L   +LK YQLKG+ WL++L++ G+NGILAD+MGLGKT+Q+I+ +A+L +   + GP+LV+AP STL NW  EI++
Sbjct: 1111 PKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKYDIWGPFLVVAPASTLHNWQQEITK 1188          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_USTMA (Putative DNA helicase INO80 OS=Ustilago maydis GN=INO80 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.641e-18
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P +   +LK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ +A+L + + + GP+LVIAP STL NW  EIS+
Sbjct:  991 PKMLTCQLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISLMAYLAEVHDIWGPFLVIAPASTLHNWQQEISK 1068          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: FFT2_SCHPO (Uncharacterized ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe GN=fft2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            +LKSYQL GV WL  L+Q  L+GILAD+MGLGKT Q +AF A L   G HGP+LV+ P STL NW+ E++R
Sbjct:  549 QLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELAR 619          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ISW1_YEAST2.011e-1856.41ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
INO80_ASHGO2.011e-1855.13Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]
SMCA5_MOUSE2.626e-1854.79SWI/SNF-related matrix-associated actin-dependent ... [more]
CHD8_RAT4.479e-1860.00Chromodomain-helicase-DNA-binding protein 8 OS=Rat... [more]
CHD8_MOUSE4.479e-1860.00Chromodomain-helicase-DNA-binding protein 8 OS=Mus... [more]
CHD8_HUMAN4.479e-1860.00Chromodomain-helicase-DNA-binding protein 8 OS=Hom... [more]
INO80_PHANO5.850e-1855.13Putative DNA helicase INO80 OS=Phaeosphaeria nodor... [more]
INO80_NEUCR5.850e-1853.85Putative DNA helicase ino-80 OS=Neurospora crassa ... [more]
INO80_USTMA7.641e-1855.13Putative DNA helicase INO80 OS=Ustilago maydis GN=... [more]
FFT2_SCHPO1.303e-1760.56Uncharacterized ATP-dependent helicase fft2 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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