CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            KL+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+HGP+LVIAPLST+ NW  E
Sbjct:  968 KLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWERE 1035          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  607 KEQRELVP-LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            KE+ +  P +L GG LK YQL+G++W++SL+ N LNGILAD+MGLGKTIQ+I+ + +L +     GP+LVI PLST++NW  E  +
Sbjct:  455 KEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEK 540          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            KL+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+HGP+LVIAPLST+ NW  E
Sbjct:  957 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWERE 1024          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            KL+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+HGP+LVIAPLST+ NW  E
Sbjct:  967 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWERE 1034          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.223e-17
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L  G+L+ YQ  G +WL SL+ NG+NGILAD+MGLGKTIQTI+ LAHL    G+ GP+LV+AP S + NW  E  +
Sbjct:  983 PFLLRGQLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKK 1060          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.223e-17
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            LK YQ+KG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ LA+L + + + GP+LV+ P STL NW  EISR
Sbjct:  567 LKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETHNIWGPFLVVTPASTLHNWQQEISR 637          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.904e-17
Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEI 852
            P +   +LK YQLKG+ WL++L++ G+NGILAD+MGLGKT+Q+I+ +A+L + + + GP+LV+AP STL NW  EI
Sbjct:  789 PKMLTCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHNWQQEI 864          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.904e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            G +L+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+ GP+LVIAPLST++NW  E
Sbjct:  752 GNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWERE 821          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_LODEL (Putative DNA helicase ino80 OS=Lodderomyces elongisporus GN=INO80 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17
Identity = 63/219 (28.77%), Postives = 104/219 (47.49%), Query Frame = 1
Query:  298 EQENVSKNEAHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNG--------------------VEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELVPLLTGG-----------KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            E+E  SK ++        KL+ L+TQT++Y+ F+ +K++   + G                    V+  +  +           A  +   + A+ A+A    ++K                 +E     P L G             LK YQ+KG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ L++L + + + GP+LV+ P STL NW  EIS+
Sbjct:  598 EEERESKRQSR-------KLNFLITQTELYSHFIGKKIKTDEIEGTDADPRIKAQEKAHLDKYAGVDAANNDILAIDFDNDDEDALHRAAAQNAQNALANAQNQAKQFDDTEPFKNPDTN--GEEMNFQNPTLLGDLSIEQPKMLKCTLKEYQIKGLNWLANLYEQGINGILADEMGLGKTVQSISVLSYLAETHNIWGPFLVVTPASTLHNWQQEISK 807          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            +L+ YQL+G+ WL+  W N  N ILAD+MGLGKTIQ+I FL+ +   G+HGP+L+IAPLST++NW  E
Sbjct:  460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWERE 527          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
CHD7_CHICK1.303e-1761.76Chromodomain-helicase-DNA-binding protein 7 OS=Gal... [more]
STH1_YEAST1.702e-1752.33Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]
CHD7_MOUSE1.702e-1761.76Chromodomain-helicase-DNA-binding protein 7 OS=Mus... [more]
CHD7_HUMAN1.702e-1761.76Chromodomain-helicase-DNA-binding protein 7 OS=Hom... [more]
SWR1_USTMA2.223e-1756.41Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
INO80_DEBHA2.223e-1757.75Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]
INO80_COCIM2.904e-1753.95Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
CHD8_XENTR2.904e-1758.57Chromodomain-helicase-DNA-binding protein 8 OS=Xen... [more]
INO80_LODEL3.792e-1728.77Putative DNA helicase ino80 OS=Lodderomyces elongi... [more]
CHD6_HUMAN3.792e-1757.35Chromodomain-helicase-DNA-binding protein 6 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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