CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  598 RVDKE----QRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            R DKE     R   P L  G L+ YQ  G++WL SLW N +NGILAD+MGLGKTIQTIA L HL    G+ G +L+I P S + NW  E  +
Sbjct:  372 RQDKEGDIGPRVRQPFLLRGTLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQHLIIVPTSVILNWEMEFKK 463          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            +PLL  G+L+ YQ  G+ WL+++++  LNGILAD+MGLGKTIQTI+ LAHL   KGN   GP+L+I P S + NW  E+ R
Sbjct:  610 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN--WGPHLIIVPTSVMLNWEMELKR 688          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  607 KEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            K+  E      G +L+ YQL+GV WL+  W N  N ILAD+MGLGKTIQ+IA L+ +   G+  P+++IAPLST++NW  E S
Sbjct:  833 KKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFS 915          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            LK YQ  G+ WL  + ++GLNGILAD+MGLGKTIQ IAFLA+L   G +GP+L++ P ST+ NW+ E++
Sbjct:  497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVN 565          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  643 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNE 849
            GKL+ YQ++G+ WLISL +N L+GILAD+MGLGKT+QTI+FL +L+    + GP+L+I P STL NW  E
Sbjct:  182 GKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRRE 251          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            LK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ LA+L +   + GP+LV+ P STL NW  EI++
Sbjct:  672 LKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITK 742          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNW 840
            +TGG+L+ +QL GV W+  LW    NGILAD+MGLGKT+QT+AFL++L  +   HGP+LV+ PLST+  W
Sbjct:  370 ITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAW 439          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            G +L+ YQL+G+ WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+ GP+L+IAPLST++NW  E
Sbjct:  856 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWERE 925          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849
            G +L+ YQL+G+ WL+  W N  N ILAD+MGLGKTIQ+I FL  +   G+ GP+L+IAPLST++NW  E
Sbjct:  857 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWERE 926          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L  G+L+ YQ+ G+ W+++L++  LNGILAD+MGLGKTIQTI+ LAH+     + GP+L++ P S + NW  E  +
Sbjct:  550 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKK 628          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SWR1_CRYNE4.953e-1751.09Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
SRCAP_HUMAN4.953e-1754.32Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
CHD8_DANRE8.448e-1749.40Chromodomain-helicase-DNA-binding protein 8 OS=Dan... [more]
SMRCD_HUMAN1.103e-1656.52SWI/SNF-related matrix-associated actin-dependent ... [more]
ISW2_YEAST1.103e-1658.57ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
INO80_CANAL1.103e-1656.34Putative DNA helicase INO80 OS=Candida albicans GN... [more]
HRP3_SCHPO1.103e-1655.71Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
CHD9_MOUSE1.103e-1655.71Chromodomain-helicase-DNA-binding protein 9 OS=Mus... [more]
CHD9_HUMAN1.103e-1655.71Chromodomain-helicase-DNA-binding protein 9 OS=Hom... [more]
SSL1_CAEEL1.441e-1648.10Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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