CN184935
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17 Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 598 RVDKE----QRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858 R DKE R P L G L+ YQ G++WL SLW N +NGILAD+MGLGKTIQTIA L HL G+ G +L+I P S + NW E + Sbjct: 372 RQDKEGDIGPRVRQPFLLRGTLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQHLIIVPTSVILNWEMEFKK 463
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17 Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858 +PLL G+L+ YQ G+ WL+++++ LNGILAD+MGLGKTIQTI+ LAHL KGN GP+L+I P S + NW E+ R Sbjct: 610 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN--WGPHLIIVPTSVMLNWEMELKR 688
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17 Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 607 KEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855 K+ E G +L+ YQL+GV WL+ W N N ILAD+MGLGKTIQ+IA L+ + G+ P+++IAPLST++NW E S Sbjct: 833 KKLDESTEYKNGNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFS 915
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1 Query: 649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855 LK YQ G+ WL + ++GLNGILAD+MGLGKTIQ IAFLA+L G +GP+L++ P ST+ NW+ E++ Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVN 565
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 643 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNE 849 GKL+ YQ++G+ WLISL +N L+GILAD+MGLGKT+QTI+FL +L+ + GP+L+I P STL NW E Sbjct: 182 GKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRRE 251
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: INO80_CANAL (Putative DNA helicase INO80 OS=Candida albicans GN=INO80 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1 Query: 649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 LK YQLKG+ WL +L++ G+NGILAD+MGLGKT+Q+I+ LA+L + + GP+LV+ P STL NW EI++ Sbjct: 672 LKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLAETYNMWGPFLVVTPASTLHNWQQEITK 742
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 1 Query: 634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNW 840 +TGG+L+ +QL GV W+ LW NGILAD+MGLGKT+QT+AFL++L + HGP+LV+ PLST+ W Sbjct: 370 ITGGELRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAW 439
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849 G +L+ YQL+G+ WL+ W N N ILAD+MGLGKTIQ+I FL + G+ GP+L+IAPLST++NW E Sbjct: 856 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWERE 925
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16 Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 640 GGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNE 849 G +L+ YQL+G+ WL+ W N N ILAD+MGLGKTIQ+I FL + G+ GP+L+IAPLST++NW E Sbjct: 857 GNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWERE 926
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858 VP L G+L+ YQ+ G+ W+++L++ LNGILAD+MGLGKTIQTI+ LAH+ + GP+L++ P S + NW E + Sbjct: 550 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKK 628 The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bpback to top |