CN184935
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16 Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 Query: 649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855 LK YQ G+ WL + ++GLNGILAD+MGLGKTIQ IAFLA+L G GP+L++ P ST+ NW+ E++ Sbjct: 492 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVN 560
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858 +P L G L+ YQ G+ WL L+ N +NGILAD+MGLGKTIQTIA LAHL +G+ GP+LV+ P S + NW E + Sbjct: 775 IPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKK 853
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858 VP L G L++YQ +G+ WL SL+ N NGILAD+MGLGKTIQTIA LA+L K N GP+L+I P S L NW E R Sbjct: 663 VPPLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTIALLAYLACEKEN--WGPHLIIVPTSVLLNWEMEFKR 741
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16 Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858 VP L G L+ YQ G+ WL L+ N NGILAD+MGLGKTIQTIA LAHL + + GP+LVI P S + NW E + Sbjct: 803 VPFLLRGTLREYQRDGLDWLAGLYANSTNGILADEMGLGKTIQTIALLAHLACTHEVWGPHLVIVPTSVMLNWEMEFKK 881
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16 Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 1 Query: 631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEI 852 +L G L+ YQL G++W++SL+ N LNGILAD+MGLGKT+Q +A +A+L KGN +GP+L+I P + L NW +E+ Sbjct: 975 MLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVNWKSEL 1049
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15 Identity = 58/160 (36.25%), Postives = 80/160 (50.00%), Query Frame = 1 Query: 400 LEKMEDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELV----PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858 L+ ED TVN E E + + +RA + T+++ +V +EQ +V P L G L++YQ +G+ WL SL+ N NGILAD+MGLGKTIQTI+ LA+L K N GP+L++ P S L NW E R Sbjct: 618 LDDSEDFTVNSSSVEGEELEKDQVDN---------SAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKEN--WGPHLIVVPTSVLLNWEMEFKR 766
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15 Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858 +P L G L+ YQ +G+ WL SL+ NG NGILAD+MGLGKTIQTI+ LA+L + + GP+L++ P S + NW E + Sbjct: 773 LPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKK 851
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15 Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1 Query: 628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858 P + GG+L+ +QL G+ W+ LW G NGILAD+MGLGKT+QT+AF++ L +GP++++ PLST+ W++ + Sbjct: 369 PFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEK 446
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15 Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858 +P L G L+ YQ G+ WL L+ N NGILAD+MGLGKTIQTIA LAHL + + GP+LVI P S + NW E + Sbjct: 937 IPFLLRGTLREYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLAHLACHHEVWGPHLVIVPTSVMLNWEMEFKK 1015
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15 Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849 TGG L YQL+G+ WL W NG + ILAD+MGLGKT+Q++ FL L G GP+L+ APLST+ NW E Sbjct: 612 TGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWERE 683 The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 115
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bpback to top |