CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEIS 855
            LK YQ  G+ WL  + ++GLNGILAD+MGLGKTIQ IAFLA+L   G  GP+L++ P ST+ NW+ E++
Sbjct:  492 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPASTIDNWLREVN 560          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            +P L  G L+ YQ  G+ WL  L+ N +NGILAD+MGLGKTIQTIA LAHL   +G+ GP+LV+ P S + NW  E  +
Sbjct:  775 IPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKK 853          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L  G L++YQ +G+ WL SL+ N  NGILAD+MGLGKTIQTIA LA+L   K N   GP+L+I P S L NW  E  R
Sbjct:  663 VPPLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTIALLAYLACEKEN--WGPHLIIVPTSVLLNWEMEFKR 741          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L  G L+ YQ  G+ WL  L+ N  NGILAD+MGLGKTIQTIA LAHL   + + GP+LVI P S + NW  E  +
Sbjct:  803 VPFLLRGTLREYQRDGLDWLAGLYANSTNGILADEMGLGKTIQTIALLAHLACTHEVWGPHLVIVPTSVMLNWEMEFKK 881          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEI 852
            +L  G L+ YQL G++W++SL+ N LNGILAD+MGLGKT+Q +A +A+L   KGN  +GP+L+I P + L NW +E+
Sbjct:  975 MLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVNWKSEL 1049          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 58/160 (36.25%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  400 LEKMEDITVNGVEQESEPVXXXXXXXXXXXAAPQCNTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELV----PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            L+  ED TVN    E E +                +    +RA   + T+++              +V +EQ  +V    P L  G L++YQ +G+ WL SL+ N  NGILAD+MGLGKTIQTI+ LA+L   K N   GP+L++ P S L NW  E  R
Sbjct:  618 LDDSEDFTVNSSSVEGEELEKDQVDN---------SAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKEN--WGPHLIVVPTSVLLNWEMEFKR 766          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            +P L  G L+ YQ +G+ WL SL+ NG NGILAD+MGLGKTIQTI+ LA+L   + + GP+L++ P S + NW  E  +
Sbjct:  773 LPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKK 851          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P + GG+L+ +QL G+ W+  LW  G NGILAD+MGLGKT+QT+AF++ L      +GP++++ PLST+  W++   +
Sbjct:  369 PFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEK 446          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            +P L  G L+ YQ  G+ WL  L+ N  NGILAD+MGLGKTIQTIA LAHL   + + GP+LVI P S + NW  E  +
Sbjct:  937 IPFLLRGTLREYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLAHLACHHEVWGPHLVIVPTSVMLNWEMEFKK 1015          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TGG L  YQL+G+ WL   W NG + ILAD+MGLGKT+Q++ FL  L   G   GP+L+ APLST+ NW  E
Sbjct:  612 TGGNLHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWERE 683          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SMRCD_MOUSE2.458e-1656.52SWI/SNF-related matrix-associated actin-dependent ... [more]
SWR1_EMENI5.476e-1653.16Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SWR1_ASHGO7.152e-1656.79Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
SWR1_GIBZE9.340e-1654.43Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
BRM_ARATH9.340e-1651.95ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
SWR1_YEAST1.220e-1536.25Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_DEBHA1.220e-1550.63Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
CHD1_YEAST1.220e-1544.87Chromo domain-containing protein 1 OS=Saccharomyce... [more]
SWR1_NEUCR1.593e-1553.16Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
CHD3_CAEEL1.593e-1554.17Chromodomain-helicase-DNA-binding protein 3 homolo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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