CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            KL+ YQ+ G+ WL  L++  L GILAD+MGLGKT QTIAF + L    ++GP+LVIAP ST+ NW+ E ++
Sbjct:  386 KLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAK 456          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.549e-15
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            +P L  G L+ YQ  G+ WL  L+ N +NGILAD+MGLGKTIQTIA LAHL   + + GP+LV+ P S + NW  E  +
Sbjct:  822 IPHLLRGTLREYQHYGLDWLAGLYNNHINGILADEMGLGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKK 900          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.549e-15
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISR 858
            +  G+++ YQ++G+ WL SL  N +NGILAD+MGLGKT+QTI+ + ++K       P+LVI P STL NW NE  +
Sbjct:  127 IENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKK 202          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: FFT1_SCHPO (Uncharacterized ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe GN=fft1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  631 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            + +G  LKSYQ+ G+ WL  +++  L+GILAD+MGLGKT Q I+FLA LK  G+   +LV+ P STL NW+ E  +
Sbjct:  408 IASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEK 483          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L  G L+ YQ +G+ WL SL+ N  NGILAD+MGLGKTIQTI+ LA+L   K N   GP+L++ P S L NW  E  R
Sbjct:  757 VPSLLRGTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKEN--WGPHLIVVPTSVLLNWEMEFKR 835          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNW 840
            + GG+++ +QL G+ W+  LW    NGILAD+MGLGKT+QT+ FL++L  +   HGP+L++ PLST+  W
Sbjct:  385 IKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAW 454          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TGG L  YQL+G+ WL   W  G + ILAD+MGLGKT+QTI FL  L   G   GPYLV APLST+ NW  E
Sbjct:  696 TGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWERE 767          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  628 PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            P L  G L++YQ +G+ WL SL+ N  NGILAD+MGLGKTIQTI+ L++L   K N   GP+L++ P S L NW  E  R
Sbjct:  621 PSLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHN--WGPHLIVVPTSVLLNWEMEFKR 698          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            +P L  G L+ YQ +G+ WL SL+ N  NGILAD+MGLGKTIQTI+ LA+L   +   GP+L+I P S + NW  E  +
Sbjct:  815 IPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVPTSVMLNWEMEFKK 893          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.033e-14
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TGG L  YQL+G+ WL   W  G + ILAD+MGLGKTIQTI FL  L   G   GP+LV APLST+ NW  E
Sbjct:  732 TGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
YFC1_SCHPO2.081e-1553.52Uncharacterized ATP-dependent helicase C25A8.01c O... [more]
SWR1_ASPFU3.549e-1551.90Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
ISW1_CAEEL3.549e-1548.68Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
FFT1_SCHPO4.636e-1550.00Uncharacterized ATP-dependent helicase fft1 OS=Sch... [more]
SWR1_KLULA6.054e-1554.32Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
HRP1_SCHPO6.054e-1548.57Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
CHD5_HUMAN6.054e-1558.33Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
SWR1_CANGA1.033e-1452.50Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
SWR1_CANAL1.033e-1450.63Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
CHD3_HUMAN1.033e-1458.33Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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