CN184935

Overview
NameCN184935
Unique NameCN184935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  598 RVDKEQRELV--PLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            RV  E+   V  P L  G L++YQ  G++WL  L+ N  NGILAD+MGLGKTIQTI+ L++L   + + GP+L+I P S + NW  E  R
Sbjct:  890 RVTPERAPAVEPPFLLRGTLRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLSYLACEHHIWGPHLIIVPTSVMLNWEMEFKR 979          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL---KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L  G L+ YQ  G++WL +L  +  NGILAD+MGLGKTIQTIA LAHL   K N   GP+L+I P S + NW  E  +
Sbjct:  439 VPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKEN--WGPHLIIVPTSVMLNWEMEFKK 517          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  625 VPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYLVIAPLSTLSNWVNEISR 858
            VP L    L+ YQ  G+ WL+++ +  LNGILAD+MGLGKTIQTIA LAHL    G  GP+L++ P S + NW  E  +
Sbjct:  906 VPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKK 984          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  607 KEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEI 852
            K+Q   +    G +L+ YQL G+ WL   W  G + ILAD+MGLGKTIQTI+FL +L   + L+GP+L++ PLSTL++W  EI
Sbjct:  465 KKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREI 547          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  607 KEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEI 852
            K+Q   +    G +L+ YQL G+ WL   W  G + ILAD+MGLGKTIQTI+FL +L   + L+GP+L++ PLSTL++W  EI
Sbjct:  467 KKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREI 549          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1L_MOUSE (Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus GN=Chd1l PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  634 LTGGKLKSYQLKGVKWLISLW--QNGLNGILADQMGLGKTIQTIAFLAHLKGN-GLHGPYLVIAPLSTLSNWVNEISR 858
            LTG +L+SYQL+GV WL+  +  QNG   IL D+MGLGKT QTIA L +L G     GP+LV+ PLS LSNW  E+ R
Sbjct:   35 LTGIRLRSYQLEGVNWLVQCFHCQNGC--ILGDEMGLGKTCQTIALLIYLVGRLNDEGPFLVLCPLSVLSNWKEEMER 110          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  637 TGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNG-LHGPYLVIAPLSTLSNWVNE 849
            TG +L  YQ++G+ WL   W  G++ ILAD+MGLGKTIQT+ FL  L   G   GP+LV  PLSTL NW  E
Sbjct:  726 TGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWERE 797          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  646 KLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEI 852
            +L+ YQL G+ WL   W  G + ILAD+MGLGKTIQTI+FL +L   + L+GP+L++ PLSTL++W  EI
Sbjct:  476 ELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREI 545          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  607 KEQRELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISR 858
            KEQ E V   +   L+ YQ+ G+ WLI  W    + ILAD+MGLGKTIQTI FL +L K   L+GP+L + PLST++ W  E  +
Sbjct:  191 KEQPEYVGKDSSYHLRDYQMDGLNWLIHSWCKDNSVILADEMGLGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQ 275          
BLAST of CN184935 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  649 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISR 858
            LK YQ  G+ WL  L+QN ++ ILAD MGLGKT Q I+F A+LK     GP+LV+ P STL NW+ E  +
Sbjct:  572 LKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVPSSTLENWLREFQK 641          
The following BLAST results are available for this feature:
BLAST of CN184935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
SWR1_YARLI1.349e-1447.78Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
SWR1_SCHPO1.761e-1453.09Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
DOM_DROME1.761e-1450.63Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
CHD1_MOUSE2.301e-1449.40Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN2.301e-1449.40Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
CHD1L_MOUSE3.005e-1456.41Chromodomain-helicase-DNA-binding protein 1-like O... [more]
CHDM_DROME5.125e-1454.17Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD1_CHICK5.125e-1454.29Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
CHD1_BOMMO5.125e-1448.24Chromodomain-helicase-DNA-binding protein 1 OS=Bom... [more]
FUN30_YEAST8.742e-1452.86Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184935 ID=CN184935; Name=CN184935; organism=Citrus sinensis; type=EST; length=858bp
GAGGCTCCTTTCTGCTCTCTTGTGGTGGCCTCCGTTTGTCTTCGGTCGTC
ACTCACTAAAAGTTCTTAGTAGGGTTTCCAAATGGTTGTCGATAACGAAG
TGAAGGACGAAGATGCCTCTGCAGAGTCCCCGACTTCCGTTCTCGAAGAC
GAGGATATATGCAAGGCAAACATTGAAGCCAAGATGGAGGAAGTGGTTAC
TTTAGATGCAGAGAGTAATGGCACACTTCTCATATCTAAAGACATGGAAG
AGGAGGAGAAAAAGTTACTAGAAGCTCGAGCTGATGAAGAGAATGTAGAA
CAAGAGAATGTGTCAAAGAACGAAGCCCACCTGAATGACCTGCAGTTCAA
TAAGTTGGATGAACTTCTAACGCAAACCCAGATGTATGCGGAGTTCCTGC
TGGAAAAAATGGAAGACATTACAGTTAATGGAGTCGAGCAGGAGAGTGAA
CCTGTTGGGAAAAAGAAGGGTCGTGGTTCAAAAAGAAAAGCAGCACCTCA
ATGCAATACTAGGAAGGCCAAGAGGGCAGTTGCAGCAATGCTTACTAGAT
CTAAAGAAGGAGAGAAAACTGAAAATGAGAACCTGAACGAGGAAGAAAGA
GTTGATAAAGAGCAGAGAGAACTTGTACCTCTGTTAACTGGGGGAAAGTT
AAAATCTTACCAACTTAAAGGTGTGAAGTGGTTGATTTCATTATGGCAAA
ATGGGTTAAATGGGATTCTTGCAGATCAAATGGGTCTTGGAAAGACAATT
CAAACAATTGCTTTCCTTGCTCATTTAAAGGGGAATGGATTGCATGGGCC
TTATTTAGTAATTGCTCCACTGTCTACTCTCTCAAATTGGGTAAATGAGA
TTTCAAGG
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