DC887580

Overview
NameDC887580
Unique NameDC887580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3410 contig Csv1_Contig3410:499..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct: 2108 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.340e-14
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -3
Query:   93 AAEQFKVPPPNTGNVAS-------KPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 314
            AAE+FKVP   +  V         +PE     ++DEEV+E G+EP+DIELVM QA V R++AV+ALK    DIV+AIMELT
Sbjct: 1423 AAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSDIVNAIMELT 1503          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA2_HUMAN (Nascent polypeptide-associated complex subunit alpha-2 OS=Homo sapiens GN=NACA2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+F+V     GN+    ++  + ++  +EEVDETGVE KD++LVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  136 QLAAAEKFRVQGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKDVKLVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDE GVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  134 QLAAAEKFKVQGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDET VE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETDVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQD--DEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + ++  +EEVDETGVE KDIE VM+QA V R++AV+ALK    +IV+AIMELT
Sbjct:  136 QLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIEWVMSQANVSRAKAVRALKNNSNNIVNAIMELT 214          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPN--TGNVASKPESSAMVQDDEE-VDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FK P       +V +    + + ++DEE VD+TGV+ KDIELV+TQA   R++A+KALK  + DIV+AIMELT
Sbjct:  136 QVAAAEKFKAPEAAGAADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKALKNNNNDIVNAIMELT 215          
BLAST of DC887580 vs. ExPASy Swiss-Prot
Match: NACP1_HUMAN (Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = -3
Query:   93 QTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEEVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 323
            Q  AAE+FKV      N+    ++  + +  +DEEVDETGVE KDIELV++QA V  ++AV+ALK ++ DIV+AIMELT
Sbjct:  135 QLAAAEKFKVQGEAVSNIQENTQTPTVQEGSEDEEVDETGVEIKDIELVLSQANVWGAKAVRALKNSN-DIVNAIMELT 212          
The following BLAST results are available for this feature:
BLAST of DC887580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NACA_HUMAN7.340e-1453.16Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN7.340e-1453.16Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE7.340e-1453.16Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE7.340e-1451.85NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA2_HUMAN1.252e-1350.63Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA1.635e-1351.90Nascent polypeptide-associated complex subunit alp... [more]
NACA_PONAB4.758e-1351.90Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHILA1.384e-1250.63Nascent polypeptide-associated complex subunit alp... [more]
NACA_DROME3.084e-1250.00Nascent polypeptide-associated complex subunit alp... [more]
NACP1_HUMAN8.973e-1251.90Putative nascent polypeptide-associated complex su... [more]

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Properties
Property NameValue
Genbank descriptionDC887580 EIC Citrus sinensis cDNA clone EIC0587 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887580 ID=DC887580; Name=DC887580; organism=Citrus sinensis; type=EST; length=325bp
ATTGTAAATGGTAACAGCGAGAAAAAAAAAAAAAAGATTTCCTTATGGGA
TCATTCAGCAGAGCAACATAATTAAGAAAGTGACCATCAATTTGTTAGCT
CCATAATGGCAGAAACGATGTCACCATCTGCGGCTTTGAGTGCTTTCACA
GCCCTTGACCTCGGTACCCCAGCTTGAGTCATTACCAACTCAATGTCCTT
TGGCTCCACACCAGTCTCATCTACTTCTTCGTCATCTTGAACCATGGCCG
ATGACTCAGGCTTTGATGCCACATTACCTGTGTTAGGAGGAGGGACCTTG
AACTGCTCTGCAGCCTGAGTTTGCA
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