CN184932

Overview
NameCN184932
Unique NameCN184932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPKF_ARATH (Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  483 EPEQSLDKSFGYNKNFGAKYELGKEVGRGHFGHTCSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            E E  L K F   +     Y LGKE+GRG FG T +    K        A K I K K+T    I+DV+RE++I++ LSG +++V+   A ED  ++++VMELC G EL
Sbjct:   86 ETETILGKPF---EEIRKLYTLGKELGRGQFGITYTC---KENSTGNTYACKSILKRKLTRKQDIDDVKREIQIMQYLSGQENIVEIKGAYEDRQSIHLVMELCGGSEL 188          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPK1_ORYSJ (Calcium-dependent protein kinase isoform 1 OS=Oryza sativa subsp. japonica GN=SPK PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.444e-12
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  540 YELGKEVGRGHFGHTCSARGKKGELKDQ-QVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            Y LG+E+G+G FG T        E+    Q A K I K+ +     IEDVRRE++I+  LSG K++V   D  ED   V+IVMELC GGEL
Sbjct:   73 YTLGRELGQGQFGKTYLCT----EISTGCQYACKTILKSNLRCVSDIEDVRREIQIMHHLSGQKNIVTIKDTYEDEQAVHIVMELCAGGEL 159          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPK5_SOLTU (Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  540 YELGKEVGRGHFGHTCSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            Y LG+++G+G FG T         +     A K I+K K+ +   +EDVRRE++I+  L+GHK++V    A ED   V+IVMELC GGEL
Sbjct:   72 YTLGRKLGQGQFGTTYLCTELSSGI---DYACKSIAKRKLISKEDVEDVRREIQIMHHLAGHKNIVSIKGAYEDPLYVHIVMELCGGGEL 158          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPKP_ARATH (Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana GN=CPK25 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 3
Query:  477 GTEPEQSLDKSFGYNKNFGAKYELGKEVGRGHFGHT--CSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            G + E  L    G+ K +   Y LG ++G G FG T  C  +G       ++ A K I K K+     +EDVRRE++I+K L G  +++    A ED   V++VMELC GGEL
Sbjct:  114 GLQAESVLKTKTGHLKEY---YNLGSKLGHGQFGTTFVCVEKGT-----GEEYACKSIPKRKLENEEDVEDVRREIEIMKHLLGQPNVISIKGAYEDSVAVHMVMELCRGGEL 218          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPKQ_ARATH (Calcium-dependent protein kinase 26 OS=Arabidopsis thaliana GN=CPK26 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  540 YELGKEVGRGHFGHTCSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            Y LG ++G+G FG T      K     ++ A K I+K K+ +   +EDVRRE++I+  L+G+K++V    A ED   V+IVMELC GGEL
Sbjct:   24 YSLGHKLGQGQFGTTYMC---KEISTGREYACKSITKRKLISKEDVEDVRREIQIMHHLAGYKNIVTIKGAYEDPLYVHIVMELCSGGEL 110          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPKC_ARATH (Calcium-dependent protein kinase 12 OS=Arabidopsis thaliana GN=CPK12 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  522 KNFGAKYELGKEVGRGHFGHTCSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            KN    Y LG+ +G+G FG T     K+     Q++A K I K K+      +DV RE++I+  LS + ++V+   A ED  NV++VMELCEGGEL
Sbjct:   16 KNVEDNYFLGQVLGQGQFGTTFLCTHKQ---TGQKLACKSIPKRKLLCQEDYDDVLREIQIMHHLSEYPNVVRIESAYEDTKNVHLVMELCEGGEL 108          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPK_SOYBN (Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  522 KNFGAKYELGKEVGRGHFGHT--CSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            +N    YE+G+++G+G FG T  C+ R   G+      A K I K K+      EDV RE++I+  LS H ++V+     ED   V++VMELCEGGEL
Sbjct:   28 QNIREVYEVGRKLGQGQFGTTFECTRRASGGKF-----ACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGTYEDSTAVHLVMELCEGGEL 120          
BLAST of CN184932 vs. ExPASy Swiss-Prot
Match: CDPK6_ARATH (Calcium-dependent protein kinase 6 OS=Arabidopsis thaliana GN=CPK6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  540 YELGKEVGRGHFGHTCSARGKKGELKDQQVAVKIISKAKMTTAISIEDVRREVKILKALSGHKHLVKFCDACEDVNNVYIVMELCEGGEL 809
            Y L +++G+G FG T         +     A K ISK K+ +   +EDVRRE++I+  L+GHK++V    A ED   V+IVMELC GGEL
Sbjct:   85 YTLSRKLGQGQFGTTYLCTDIATGV---DYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCAGGEL 171          
The following BLAST results are available for this feature:
BLAST of CN184932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CDPKF_ARATH5.700e-1240.37Calcium-dependent protein kinase 15 OS=Arabidopsis... [more]
CDPK1_ORYSJ7.444e-1246.15Calcium-dependent protein kinase isoform 1 OS=Oryz... [more]
CDPK5_SOLTU1.270e-1143.33Calcium-dependent protein kinase 5 OS=Solanum tube... [more]
CDPKP_ARATH1.658e-1138.05Calcium-dependent protein kinase 25 OS=Arabidopsis... [more]
CDPKQ_ARATH2.166e-1143.33Calcium-dependent protein kinase 26 OS=Arabidopsis... [more]
CDPKC_ARATH2.166e-1141.67Calcium-dependent protein kinase 12 OS=Arabidopsis... [more]
CDPK_SOYBN3.694e-1140.82Calcium-dependent protein kinase SK5 OS=Glycine ma... [more]
CDPK6_ARATH8.230e-1143.33Calcium-dependent protein kinase 6 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006G05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184932 ID=CN184932; Name=CN184932; organism=Citrus sinensis; type=EST; length=810bp
GAGGATCAGATCCGTGTTGGAGATTTTGTACCGTCCGATGTGTGGACTTT
GATTGAGTCTCGATCGGACGAGAAGCCGGTGCTGGATTCCTTACGATGGG
GCAGTGTTACGGTAAGACCATCCCAACAACTGAAAATGACGCCACAACGA
GCGCAACCACAACGACTATGGTCGTATCCGCCAATCAAAATCAAACGCCG
TTACCGCCGTCAACTCCAGGTAACGGTTCCATGCCGGTGAAGAATACCCC
GGGACGGTCCTCTCACCCGAGCCCCTGGCCGAGTCCTTATCCTCACGGCG
TTTCGGCCAGTCCACTGCCTGCCGGCGTCTCTCCGTCTCCGGCTAGAGCG
TCGACGCCGAGGAGATTTTTTAGAAGGCCGTTCCCTCCGCCATCTCCGGC
GAAACACATTAAGGCGTCTTTAGCTAAGCGACTTGGCGGTGGGAAGCCAA
AAGAAAGTACGATTCCCGAAGAGCGAGGAACCGAACCGGAGCAGTCGCTC
GACAAGAGCTTCGGGTACAACAAGAATTTTGGGGCTAAGTATGAGCTTGG
AAAGGAAGTAGGGCGAGGCCATTTTGGTCATACTTGCTCTGCTAGAGGTA
AAAAGGGTGAGCTCAAGGATCAGCAAGTTGCTGTCAAGATAATATCTAAA
GCCAAGATGACGACAGCAATATCAATTGAGGATGTGCGGAGGGAGGTGAA
AATATTGAAAGCATTGTCAGGACATAAGCATCTAGTCAAATTCTGTGATG
CTTGTGAGGATGTGAACAATGTGTACATAGTCATGGAATTGTGTGAGGGT
GGAGAACTTC
back to top