CN184929

Overview
NameCN184929
Unique NameCN184929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184929_ssr562 microsatellite CN184929_ssr562:562..579. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184929_ssr582 microsatellite CN184929_ssr582:582..595. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184929_ssr439 microsatellite CN184929_ssr439:439..450. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  107 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 385
            +AI+C  V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  110 AITCGQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 379
            A++CG+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  110 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 388
            AI+CG VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  110 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 388
            AI+C  V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.160e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  110 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDCSRVR 388
            A++C  V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 2
Query:   98 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCSRV 385
            PV  AI+C QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 2
Query:  113 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 385
            + CGQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 2
Query:   98 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRVR 388
            P      CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
BLAST of CN184929 vs. ExPASy Swiss-Prot
Match: NLT13_PARJU (Probable non-specific lipid-transfer protein 1 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  116 TCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISP---STDC 376
            TCG V  +L PC+PF++   + P   CCSG + L+G  +T P R  AC C++ A  T   I   + + +P  CG+ +  K+ P   + DC
Sbjct:   39 TCGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYSDIDGKLVSEVPKHCGI-VDSKLPPIDVNMDC 127          
The following BLAST results are available for this feature:
BLAST of CN184929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
NLTP8_ARATH3.053e-1640.86Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP7_ARATH3.053e-1644.68Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP5_ARATH5.208e-1651.04Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTPA_ARATH8.883e-1641.05Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH1.160e-1542.71Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA7.520e-1542.27Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO7.039e-1338.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU5.044e-1131.63Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT13_PARJU8.604e-1135.56Probable non-specific lipid-transfer protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006G03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184929 ID=CN184929; Name=CN184929; organism=Citrus sinensis; type=EST; length=829bp
GAGGCTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCTG
CTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCCG
GTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATG
CATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTA
GCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAA
GCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCAA
ACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTT
ACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTT
TGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAATA
AAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATGA
GTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTATGTCATATTAAA
TATGTAAACGCCACACACACACACACACACCCACACACACACACAAACAC
AAATAAGCCCGCATTCAAATTCCCACATATCTCACTGAAATAACAAAAGG
GCTTGTTTAATTTTCTGAAATATAAGCATGGCTTGTTCATCGGCAGCTCA
AATTCATTTCCTCGGTAATATTTCATTTTCGTCGAGAAAAAACAGTAAAA
CCGGTCGTGAGAACACGGCGGGGTCGAGAAATTTGTTTTTTGGGCAAAGG
GTTGGCGGGAACCGATTCGGGTCGGTCCC
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