CN184923

Overview
NameCN184923
Unique NameCN184923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:1..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.033e-49
Identity = 100/150 (66.67%), Postives = 104/150 (69.33%), Query Frame = 2
Query:   56 MPSTFGGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            M S F GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI+PKA+ Y+LFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGL+
Sbjct:    1 MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLI 150          

HSP 2 Score: 32.3426 bits (72), Expect = 4.033e-49
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  501 LCVGIILSSRAGQSRAD 551
            L VGIILSSRAGQSRAD
Sbjct:  149 LIVGIILSSRAGQSRAD 165          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.254e-49
Identity = 101/148 (68.24%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   62 STFGGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            S F GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI+PKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGL+
Sbjct:    4 SGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLI 151          

HSP 2 Score: 30.8018 bits (68), Expect = 5.254e-49
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  501 LCVGIILSSRAGQSRAD 551
            L VGIILSSRAGQSRA+
Sbjct:  150 LIVGIILSSRAGQSRAE 166          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.931e-49
Identity = 100/148 (67.57%), Postives = 103/148 (69.59%), Query Frame = 2
Query:   62 STFGGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            S F GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI+PK +SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGL+
Sbjct:    2 SNFAGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLI 149          

HSP 2 Score: 30.8018 bits (68), Expect = 8.931e-49
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  501 LCVGIILSSRAGQSRAD 551
            L VGIILSSRAGQSRA+
Sbjct:  148 LIVGIILSSRAGQSRAE 164          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.291e-29
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLMCWYHL 520
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+   +L
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 152          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 75/144 (52.08%), Postives = 88/144 (61.11%), Query Frame = 2
Query:   83 TAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-SPKA--RSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            TAP             + +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                 +AIGIVGDAGVRA+AQQ KL+VGM            YGL+
Sbjct:    8 TAPFFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLI 151          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.523e-29
Identity = 64/130 (49.23%), Postives = 83/130 (63.85%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLMCWYHL 520
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+   +L
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 152          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.719e-28
Identity = 61/94 (64.89%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  224 VPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            VPVVMAGVLGIYGLIIAVIISTGI+PKA+ YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGL+
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLI 94          

HSP 2 Score: 32.3426 bits (72), Expect = 5.719e-28
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  501 LCVGIILSSRAGQSRAD 551
            L VGIILSSRAGQSRAD
Sbjct:   93 LIVGIILSSRAGQSRAD 109          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.061e-28
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            +C+GA+YGTAKSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  ++     Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+
Sbjct:   24 TCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALTQD--HYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 146          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.796e-27
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLMCWYHL 520
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ G   +   Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+   +L
Sbjct:   28 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA-GALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 156          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.796e-27
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLMCWYHL 520
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +    + Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+   +L
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 154          
The following BLAST results are available for this feature:
BLAST of CN184923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_AVESA4.033e-4966.67V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH5.254e-4968.24V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL_SOLLC8.931e-4967.57V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI7.291e-2949.23V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_PLECA9.523e-2952.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE9.523e-2949.23V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE5.719e-2864.89V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_NEUCR8.061e-2848.80V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DROME1.796e-2750.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE1.796e-2749.23V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184923 ID=CN184923; Name=CN184923; organism=Citrus sinensis; type=EST; length=630bp
GAGGAACAGTTCAACGCCGATCTAAAGCGACACCGTTTCAGATCTACAAT
CCACAATGCCTTCAACATTCGGCGGCGATGAAACGGCACCGTTCTTCGGC
TTCCTCGGCGCTGCCGCCGCCCTTGTCTTCTCCTGTATGGGAGCTGCGTA
TGGAACAGCCAAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGC
CTGAGCTGGTGATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTG
GGTATATATGGTTTGATTATTGCTGTTATTATCAGTACTGGGATTAGCCC
CAAGGCCAGGTCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCCG
GTTTGGCTTGTGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATC
GTTGGTGACGCTGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGT
TGGGATGATCCTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCC
TTATGTGTTGGTATCATCTTGTCTTCACGTGCTGGTCAGTCCAGAGCAGA
TTAACAAGGGAATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCT
GGAGGAGCGAGATTTTTTTTATATTATTCT
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