CN184923

Overview
NameCN184923
Unique NameCN184923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:1..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  +SP    Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG++
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMI 153          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.891e-25
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  ++       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGL+
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLND---DISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 147          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  +SP    Y LF+G+                  AIG+VGD GVR    QP+LFVG+            YG++
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMI 153          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 2
Query:  140 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            G+AYGTAK+G G+ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + +                  AIGI GDAGVRA +QQP++FVGM            YG++
Sbjct:   40 GSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQPRMFVGMILILIFAEVLGLYGMI 161          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            +C GA+YGTAKSGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V++S  +S K     L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGL+
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 145          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.858e-24
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            S +GAA GTAKSG+G++ +G  RPEL+MKS++PVVM+G+L +YGL++AV+++ G+SP    Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG++
Sbjct:   29 SSLGAAIGTAKSGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLSP-TEEYTLFNGFMHLAAGLCVGFACLSSGYAIGIVGDVGVRKFMHQPRLFVGIVLILIFAEVLGLYGMI 152          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.427e-24
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            SC GAA GTAKSG+G++ +G  +PEL+MKS++PVVM+G+L +YGL+++V+I+ G+SP   +Y LF+G+                  +IGIVGD GVR    QP+LFVG+            YG++
Sbjct:   29 SCAGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSP-TENYSLFNGFMHLACGLSVGFACLASGYSIGIVGDEGVRQFMHQPRLFVGIVLILIFAEVLGLYGMI 152          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.407e-24
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  137 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            MGAAYGTAK+ VG+++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +                 MAIGIVGD+GVRA  QQPKL+V M            YGL+
Sbjct:   45 MGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVIMMLILIFSEALGLYGLI 166          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 2
Query:  140 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            GAAYGTAK+GVG+++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    +   L+ G+                  AIGIVGDAGVR  AQQP+LFV M            YGL+
Sbjct:   28 GAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLI 146          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 54/123 (43.90%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  137 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  K     L+ G+                  AIGIVGDAGVR ++QQP+LFVGM            YGL+
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVRGSSQQPRLFVGMILILIFAEVLGLYGLI 145          
The following BLAST results are available for this feature:
BLAST of CN184923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_CANGA2.867e-2545.60V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_HUMAN4.891e-2548.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST6.387e-2544.80V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL1_CAEEL1.090e-2445.90V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL_CANTR1.423e-2445.60V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_ASHGO1.858e-2444.00V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_DEBHA2.427e-2443.20V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_DICDI5.407e-2448.78V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL_SCHPO3.505e-2345.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_YEAST1.739e-2243.90V-type proton ATPase subunit c OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184923 ID=CN184923; Name=CN184923; organism=Citrus sinensis; type=EST; length=630bp
GAGGAACAGTTCAACGCCGATCTAAAGCGACACCGTTTCAGATCTACAAT
CCACAATGCCTTCAACATTCGGCGGCGATGAAACGGCACCGTTCTTCGGC
TTCCTCGGCGCTGCCGCCGCCCTTGTCTTCTCCTGTATGGGAGCTGCGTA
TGGAACAGCCAAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGC
CTGAGCTGGTGATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTG
GGTATATATGGTTTGATTATTGCTGTTATTATCAGTACTGGGATTAGCCC
CAAGGCCAGGTCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCCG
GTTTGGCTTGTGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATC
GTTGGTGACGCTGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGT
TGGGATGATCCTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCC
TTATGTGTTGGTATCATCTTGTCTTCACGTGCTGGTCAGTCCAGAGCAGA
TTAACAAGGGAATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCT
GGAGGAGCGAGATTTTTTTTATATTATTCT
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