CN184923

Overview
NameCN184923
Unique NameCN184923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:1..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  131 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            SC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  +SP    Y LF G+                  AIG+VGD GV++  +Q ++FV M            YGL+
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLI 148          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  140 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISP--KARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR+   Q ++FVGM            YGL+
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLI 156          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  140 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   ++     Y L   +                 MAIGI GD GVR  AQQPKLFVGM            YG +
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLFINVTKS--EYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFI 155          
BLAST of CN184923 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  140 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGISPKARSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLM 505
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   ++     Y L   +                 M+IGI GD GVR  AQQPKLFV M            YG +
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLFINVNKS--EYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFI 153          
The following BLAST results are available for this feature:
BLAST of CN184923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_SCHPO6.610e-2240.80V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_NEUCR4.284e-2140.32V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTHI1.247e-2041.80V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTDI4.737e-2041.80V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184923 ID=CN184923; Name=CN184923; organism=Citrus sinensis; type=EST; length=630bp
GAGGAACAGTTCAACGCCGATCTAAAGCGACACCGTTTCAGATCTACAAT
CCACAATGCCTTCAACATTCGGCGGCGATGAAACGGCACCGTTCTTCGGC
TTCCTCGGCGCTGCCGCCGCCCTTGTCTTCTCCTGTATGGGAGCTGCGTA
TGGAACAGCCAAGAGTGGTGTTGGTGTGGCGTCAATGGGTGTTATGAGGC
CTGAGCTGGTGATGAAGTCGATTGTGCCAGTTGTTATGGCTGGTGTTTTG
GGTATATATGGTTTGATTATTGCTGTTATTATCAGTACTGGGATTAGCCC
CAAGGCCAGGTCATATTACCTTTTTGATGGCTATGCTCATCTCTCCTCCG
GTTTGGCTTGTGGTCTTGCCGGGCTTTCTGCTGGAATGGCTATTGGAATC
GTTGGTGACGCTGGTGTCAGAGCCAATGCACAGCAGCCAAAACTCTTTGT
TGGGATGATCCTTATCCTCATTTTCGCTGAAGCCCTTGCACTGTATGGCC
TTATGTGTTGGTATCATCTTGTCTTCACGTGCTGGTCAGTCCAGAGCAGA
TTAACAAGGGAATTTGTATTGCTAAGTATTCTTTTATAACTTGTCACTCT
GGAGGAGCGAGATTTTTTTTATATTATTCT
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