CN184910

Overview
NameCN184910
Unique NameCN184910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.121e-13
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = -3 
Query:  301 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 411
            KAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  303 KAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339

HSP 2 Score: 26.9498 bits (58), Expect = 1.121e-13
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDSRSSIFDA
Sbjct:  291 FIGDSRSSIFDA 302
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.121e-13
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGI+L+  FVKLVSWYDNEWGYSTRVVDLI+H+SK Q
Sbjct:  300 KAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337

HSP 2 Score: 25.7942 bits (55), Expect = 1.121e-13
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  288 FIGDNRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.121e-13
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = -3 
Query:  307 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 411
            KAGIALSKKFVK+V+WYDNEWGYS+RVVDLI HM+
Sbjct:  300 KAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334

HSP 2 Score: 27.335 bits (59), Expect = 1.121e-13
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  288 FVGDSRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.892e-13
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = -3 
Query:  301 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 411
            KAGIAL+  F+KLVSWYDNEWGYSTRVVDLI H+ KT
Sbjct:  300 KAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336

HSP 2 Score: 26.1794 bits (56), Expect = 1.892e-13
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            FVGD+RSSIFDA
Sbjct:  288 FVGDNRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.892e-13
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  300 KAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337

HSP 2 Score: 26.1794 bits (56), Expect = 1.892e-13
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDSRSSIFDA
Sbjct:  288 FLGDSRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.187e-13
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = -3 
Query:  301 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 411
            KAGI L+  FVKLVSWYDNEWGYS+RVVDLI HMSKT
Sbjct:  300 KAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336

HSP 2 Score: 26.1794 bits (56), Expect = 3.187e-13
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            FVGD+RSSIFDA
Sbjct:  288 FVGDNRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.193e-13
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  300 KAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337

HSP 2 Score: 25.7942 bits (55), Expect = 3.193e-13
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F GDSRSSIFDA
Sbjct:  288 FTGDSRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.387e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM+ T+
Sbjct:  300 KAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337

HSP 2 Score: 25.0238 bits (53), Expect = 5.387e-13
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F GDSRSSIFDA
Sbjct:  288 FQGDSRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.015e-13
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  268 KAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305

HSP 2 Score: 25.0238 bits (53), Expect = 7.015e-13
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F GDSRSSIFDA
Sbjct:  256 FQGDSRSSIFDA 267
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.082e-13
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = -3 
Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGIALS  FVKLV+WYDNEWGYS RVVDLIVHM+K
Sbjct:  302 KAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337

HSP 2 Score: 23.8682 bits (50), Expect = 9.082e-13
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+ DSRSSIFDA
Sbjct:  290 FITDSRSSIFDA 301
The following BLAST results are available for this feature:
BLAST of CN184910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
G3PC_TAXBA1.121e-1381.08Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.121e-1381.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.121e-1385.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.892e-1381.08Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE1.892e-1384.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU3.187e-1383.78Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PD_MAIZE3.193e-1381.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE5.387e-1381.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU7.015e-1381.58Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA9.082e-1386.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184910 ID=CN184910; Name=CN184910; organism=Citrus sinensis; type=EST; length=446bp
GAGGAACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTT
TCCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAA
CTCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCA
GGTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACC
CTCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACT
TAGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTG
GGTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCC
ACTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCA
ATACCAGCCTTGCATCAAAGATACTTGACCTACTGTCACCAACAAA
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