CN184910

Overview
NameCN184910
Unique NameCN184910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:73..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.180e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = -3 
Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGIAL+ KFVKLVSWYDNE GYSTRVVDLIVH++K
Sbjct:  301 KAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336

HSP 2 Score: 25.7942 bits (55), Expect = 1.180e-12
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  289 FIGDTRSSIFDA 300
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.356e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            KAGIALSK FVKLVSWYDNE GYSTRVVDLI H++  +
Sbjct:  300 KAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337

HSP 2 Score: 25.7942 bits (55), Expect = 3.356e-12
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  288 FIGDNRSSIFDA 299
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.655e-12
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVD--LIVHMSKTQ 411
            KAGIAL++ FVKLVSWYDNEWGYS+RV+D  LIVHM+  Q
Sbjct:  302 KAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341

HSP 2 Score: 25.7942 bits (55), Expect = 5.655e-12
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GD+RSSIFDA
Sbjct:  290 FIGDNRSSIFDA 301
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.658e-12
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = -3 
Query:  307 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 411
            KAGIAL+  FVK+VSWYDNEWGYS RV+DLI HM+
Sbjct:  299 KAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333

HSP 2 Score: 27.335 bits (59), Expect = 5.658e-12
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            FVGDSRSSIFDA
Sbjct:  287 FVGDSRSSIFDA 298
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.239e-11
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = -3 
Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH++K
Sbjct:  296 KAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331

HSP 2 Score: 25.0238 bits (53), Expect = 1.239e-11
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDS SSIFDA
Sbjct:  284 FIGDSHSSIFDA 295
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.239e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = -3 
Query:  298 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 411
            +AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  295 EAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332

HSP 2 Score: 25.0238 bits (53), Expect = 1.239e-11
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDS SSIFDA
Sbjct:  283 FIGDSHSSIFDA 294
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.239e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -3 
Query:  304 AGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 408
            AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  297 AGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331

HSP 2 Score: 26.1794 bits (56), Expect = 1.239e-11
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDSRSSIFDA
Sbjct:  284 FLGDSRSSIFDA 295
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 4.567e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = -3 
Query:  304 KAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 411
            KAGIAL+  F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  297 KAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332

HSP 2 Score: 22.3274 bits (46), Expect = 4.567e-11
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = -1 
Query:  411 GDSRSSIFDA 440
            GD+RSSIFDA
Sbjct:  287 GDTRSSIFDA 296
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 4.568e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -3 
Query:  304 AGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 408
            AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  297 AGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331

HSP 2 Score: 24.2534 bits (51), Expect = 4.568e-11
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDS SSIFDA
Sbjct:  284 FLGDSHSSIFDA 295
[Close]
BLAST of CN184910 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 4.568e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -3 
Query:  304 AGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 408
            AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  297 AGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331

HSP 2 Score: 24.2534 bits (51), Expect = 4.568e-11
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = -1 
Query:  411 FVGDSRSSIFDA 446
            F+GDS SSIFDA
Sbjct:  284 FLGDSNSSIFDA 295
The following BLAST results are available for this feature:
BLAST of CN184910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
G3PC_PEA1.180e-1286.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY3.356e-1278.95Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI5.655e-1275.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR5.658e-1277.14Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI1.239e-1175.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PHYIN1.239e-1173.68Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P2_CANGA1.239e-1180.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_EMENI4.567e-1177.78Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P3_YEAST4.568e-1180.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST4.568e-1180.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184910 ID=CN184910; Name=CN184910; organism=Citrus sinensis; type=EST; length=446bp
GAGGAACAGGTCTTCGATACTAACTAGATGAAAAATTATAAAAGCAAGTT
TCCAATAGACAATTGTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAA
CTCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGCATGAGCA
GGTAAGGCTCTGGATAATGTCTTGGAAACAATTTTATTTAAACTCAGACC
CTCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACACCACACT
TAGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAAGTTACTG
GGTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTGTAGCCCC
ACTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACTCAAAGCA
ATACCAGCCTTGCATCAAAGATACTTGACCTACTGTCACCAACAAA
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