CN184902

Overview
NameCN184902
Unique NameCN184902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2442 contig Csv1_Contig2442:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 63/210 (30.00%), Postives = 106/210 (50.48%), Query Frame = 3
Query:  177 KGCITSDNTVASSPLKHFTHT---------TRHPSFFE-HDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQY------IISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQALAIGNTLRHPYH 758
            + C++S       PL +F  T         T +PS FE +D +V   +K   +K I      +S E +++ID + RLG+ Y F+++IEE+L + +      +    C     DL   A+ FR+ RQ G+ + +D+F+ F   +G+F + ++  D   ++ ++EAS LS+ GE+ L+EA  F+   L      L  N    I N L  P+H
Sbjct:   52 QACLSSTTHQEVRPLAYFPPTVWGNRFASLTFNPSEFESYDERVIVLKK--KVKDILISSTSDSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKEC-----DLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKE-SLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKDYLQSSAVELFPNLKRHITNALEQPFH 253          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.986e-16
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  258 FEHDIQVEHSRKLKDLKHIFS---LVGGNS----FEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNE 692
            ++ D Q    + +KDLK       L   NS     E L  IDA++RLGI Y F++EI ++ Q  Y    T  G        +L FRL+RQ G++V +D+F+ +  KEGRF + ++ +D+  L+E+YEA+ + + GE  LD+A  F+   L+E
Sbjct:   27 YDQDEQEGVEQVIKDLKEEVKSELLTALNSPTQHTELLKFIDAIERLGIAYYFEEEINQVFQHMY----TAYGDKWTGGNTSLWFRLMRQHGFFVSSDIFSTYKDKEGRFKE-SLEKDVHGLLELYEAAYMFVPGEGILDDALVFTRTCLDE 173          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 47/153 (30.72%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  261 EHDIQVEHSRKLKDLK----HIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHL 707
            ++ +  +++++++ LK    ++    G    + L +ID ++RLGI Y F+ EI++IL + Y  +S C    +DL   AL+FRLLRQ G+ +  ++F+ F  + G+F + +++ D+  L+ +YEAS +    ++ L++A  FS   L     HL
Sbjct:   35 KNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKE-SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHL 182          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  348 LVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLN 689
            L +ID +QRLGI Y F+ EI+  LQ  Y    T G + +     +L FRL+R++GYYV  D+FNN+  K G F Q +++ D+  L+E+YEA+ + + GE  L++A  F+   L+
Sbjct:   64 LKLIDEIQRLGIPYHFEREIDHALQCIY---ETYGDNWNG-DRSSLWFRLMRKQGYYVTCDVFNNYKDKNGAFKQ-SLANDVEGLLELYEATSMRVPGEIILEDALGFTRSRLS 172          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  339 FEGLVMIDAVQRLGIEYLFKDEIEEILQ---RQYIISSTCGG---HLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQF--NVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNE 692
            FE + ++D +QRLGI   F++EI+E L    R +  +  C     H+ D+ + A+ FRLLRQ GY V AD+F NF  KEG F  F    ++ +  +  +Y ASQL+   EE L  A +FS   L E
Sbjct:  329 FEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLE 453          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  348 LVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECM 698
            L +ID +QRLG+ + F+ EI  IL   Y  +        +L   +L FRLLRQ GY V  ++FN F   +G F    + +D   ++ ++EAS  S+ GE  ++EA QF++K L E M
Sbjct:  105 LELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGF----ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEVM 217          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  336 SFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECM----THLDHNQALAIGNTLRHPYH 758
            + + L +ID +Q LG+ Y F+DEI++IL    I +     H +DL   AL FR+LRQ G+ V  D+F+ F I++      N+++D   ++++YEAS L   GE+ L+ A +FS + L E        +D + +  I ++L  P H
Sbjct:  100 AIQQLELIDDLQYLGLSYFFQDEIKQILSS--IHNEPRYFHNNDLYFTALGFRILRQHGFNVSEDVFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTLELARRFSTRSLREKFDEGGDEIDEDLSSWIRHSLDLPLH 242          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPSD1_ABIGR (Alpha-bisabolene synthase OS=Abies grandis GN=ag1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 71/234 (30.34%), Postives = 108/234 (46.15%), Query Frame = 3
Query:   99 SKDPDKISKTSRPNLIEFTPSPTIYQKGCI-------------TSDNTVASSPLKH---FTHTTRHPSFFEHDIQVEHSRKLKDLKHIFSLVGGNSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCG---GHLH---DLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRF----SQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQA 722
            +K  ++++K SR  +    PSP +Y    I             + D +  SSP      F HT          ++  +S  +K    +  L   +  E L+++D + RLGI   F+ EI+E L   Y   +  G   G L+   DL+  AL FRLLR   Y V   +F+NF    G+F     QFN  +D+  ++ +Y ASQL+  GE  LDEA  F+ K L E +   + + A
Sbjct:  209 TKRQERLAKLSREEIYA-VPSPLLYSLEGIQDIVEWERIMEVQSQDGSFLSSPASTACVFMHTGDAKC-----LEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFN--KDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSA 434          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 3
Query:  249 PSFFEHDIQVEHSRKL----KDLKHIFSLVGG-------NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISST----CGGH--LHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFS---QFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLD-HNQALAIGNTLRHPYH 758
            P+ +E    +E + KL    K++ +  SL  G       +  + L ++D+++RLGI   FKDEI+  L   Y         CG    + DL   AL  R LR  GY V +D+F  F  + G+FS        E+I  ++ ++ AS ++  GE+ +DEA  FS K L E +  +   + +  IG+ L + +H
Sbjct:   83 PTAYEEKSYLERAEKLIGEVKNMFNSMSLEDGELMSPLNDLIQRLWIVDSLERLGIHRHFKDEIKSALDYVYSYWGENGIGCGRESVVTDLNSTALGLRTLRLHGYPVSSDVFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVSSLSREIGDVLEYGWH 273          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  291 KLKDLKHIFSLV--GGNSF-EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISST------CGGH--LHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFS---QFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNECMTHLDHNQ--ALAIGNTLRHPYH 758
            ++KD+   F  +  GGN   + L+++D V+RLGI+  FK EI+  L   Y+ S        CG    + DL   AL  R LR  GY V +D+ N F  K G+FS      +  +I  ++ ++ AS ++  GE+ +DEA  FS K L E +  +  +   +L I + L + +H
Sbjct:   97 EVKDIMFNFKSLEDGGNDLLQRLLLVDDVERLGIDRHFKKEIKTALD--YVNSYWNEKGIGCGRESVVTDLNSTALGLRTLRLHGYTVSSDVLNVFKDKNGQFSSTANIQIEGEIRGVLNLFRASLVAFPGEKVMDEAETFSTKYLREALQKIPASSILSLEIRDVLEYGWH 266          
The following BLAST results are available for this feature:
BLAST of CN184902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CASS_RICCO3.432e-1630.00Casbene synthase, chloroplastic OS=Ricinus communi... [more]
ECS1_ARTAN9.986e-1636.18Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
5EAS_TOBAC3.213e-1430.72Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
AMS1_ARTAN7.157e-1440.35Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
KSA_ARATH9.347e-1439.68Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
RLC1_CITLI1.594e-1337.61(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
SSS_SALOF4.639e-1334.48(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
TPSD1_ABIGR1.033e-1230.34Alpha-bisabolene synthase OS=Abies grandis GN=ag1 ... [more]
TPSD3_ABIGR1.763e-1230.37Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD6_ABIGR3.927e-1232.56Camphene synthase, chloroplastic OS=Abies grandis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184902 ID=CN184902; Name=CN184902; organism=Citrus sinensis; type=EST; length=760bp
GAGGCTCATTTCTTCAGAGAAATATTATAAAGAAGCATATATATTCGATG
GCTTTCTCTTCCAGTTCTAGAGCAAAGTTGTCCGGTACCTCCCACATTTC
AAAGGATCCAGATAAGATTTCAAAAACTAGCAGACCTAACCTCATTGAAT
TTACTCCTTCGCCTACTATCTATCAAAAAGGGTGCATTACTAGTGACAAT
ACAGTCGCTTCTTCTCCCCTTAAACACTTCACCCACACAACTAGACACCC
CAGCTTCTTCGAGCATGATATTCAAGTCGAACATTCTCGGAAACTGAAGG
ATCTCAAGCACATATTTAGCCTAGTCGGGGGAAATTCTTTTGAAGGATTA
GTCATGATTGATGCTGTTCAACGGCTAGGCATTGAGTACCTTTTCAAAGA
TGAGATTGAAGAAATTTTACAAAGGCAATATATCATATCTTCCACTTGTG
GTGGTCACCTCCATGATCTTCAAGAGGTTGCCCTTCGCTTTCGGCTGCTG
AGACAAGAAGGTTACTACGTGCCTGCGGATATGTTTAACAACTTTATGAT
CAAGGAAGGGAGATTCAGCCAGTTCAACGTAAGTGAAGACATAGGGAGAT
TGATGGAAGTATATGAAGCTTCGCAGCTAAGTATAGCAGGCGAAGAAGGG
CTTGACGAAGCTGGACAATTTAGTGCGAAGATGCTCAATGAGTGCATGAC
ACATCTTGATCACAATCAAGCTCTAGCTATCGGGAATACGTTGAGGCATC
CATACCACAA
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