CN184902

Overview
NameCN184902
Unique NameCN184902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2442 contig Csv1_Contig2442:1..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  342 EGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNE 692
            E L MID++QRLGI Y +K EI +IL++ +           DL   +L F LLRQ G+ V  D F+ F+ + G F +  +  DI  L+ +YEAS  S+  E  L E   ++ K L+E
Sbjct:  108 EELEMIDSLQRLGISYHYKHEIHDILRKIHDQHGEIERETQDLHATSLEFILLRQHGFDVSQDAFDVFISETGEFRK-TLHSDIKGLLSLYEASYFSMDSEFKLKETRIYANKRLSE 223          
BLAST of CN184902 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 51/143 (35.66%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  333 NSFEGLVMIDAVQRLGIEYLFKDEIEEILQRQYIISSTCGGHLHDLQEVALRFRLLRQEGYYVPADMFNNFMIKEGRFSQFNVSEDIGRLMEVYEASQLSIAGEEGLDEAGQFSAKMLNE-CMTHLDHNQALAIGNTLRHPYH 758
            +S + L +ID ++RLGI   F  EI EIL  +Y  ++       DL   ALRF+LLRQ  + V  ++F+ F   +G   + ++ +D   L+++YEAS LS  GEE L  A  F+ K L++  +   D N   +I   L  P H
Sbjct:  104 DSIQRLELIDDLRRLGISCHFDREIVEILNSKYYTNNEIDES--DLYSTALRFKLLRQYDFSVSQEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHLARDFATKFLHKRVLVDKDINLLSSIERALELPTH 244          
The following BLAST results are available for this feature:
BLAST of CN184902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TPS02_ARATH3.927e-1238.46Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
SCS_SALOF5.129e-1235.661,8-cineole synthase, chloroplastic OS=Salvia offi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006F06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184902 ID=CN184902; Name=CN184902; organism=Citrus sinensis; type=EST; length=760bp
GAGGCTCATTTCTTCAGAGAAATATTATAAAGAAGCATATATATTCGATG
GCTTTCTCTTCCAGTTCTAGAGCAAAGTTGTCCGGTACCTCCCACATTTC
AAAGGATCCAGATAAGATTTCAAAAACTAGCAGACCTAACCTCATTGAAT
TTACTCCTTCGCCTACTATCTATCAAAAAGGGTGCATTACTAGTGACAAT
ACAGTCGCTTCTTCTCCCCTTAAACACTTCACCCACACAACTAGACACCC
CAGCTTCTTCGAGCATGATATTCAAGTCGAACATTCTCGGAAACTGAAGG
ATCTCAAGCACATATTTAGCCTAGTCGGGGGAAATTCTTTTGAAGGATTA
GTCATGATTGATGCTGTTCAACGGCTAGGCATTGAGTACCTTTTCAAAGA
TGAGATTGAAGAAATTTTACAAAGGCAATATATCATATCTTCCACTTGTG
GTGGTCACCTCCATGATCTTCAAGAGGTTGCCCTTCGCTTTCGGCTGCTG
AGACAAGAAGGTTACTACGTGCCTGCGGATATGTTTAACAACTTTATGAT
CAAGGAAGGGAGATTCAGCCAGTTCAACGTAAGTGAAGACATAGGGAGAT
TGATGGAAGTATATGAAGCTTCGCAGCTAAGTATAGCAGGCGAAGAAGGG
CTTGACGAAGCTGGACAATTTAGTGCGAAGATGCTCAATGAGTGCATGAC
ACATCTTGATCACAATCAAGCTCTAGCTATCGGGAATACGTTGAGGCATC
CATACCACAA
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