DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNE7 (50S ribosomal protein L3 OS=Synechococcus elongatus (strain PCC 7942) GN=rplC PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52
Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT ATDGY+A+QIG+  VR+K+L+KPELGHL K+G  P+RHL E+R+ S DG E GQ L  +  F  G  VDV G TIG+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGRVY GK+M GR G     IR L +V++D D  ++++KG+VPGKPG LL + PA +VG+
Sbjct:   37 QIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKPGALLNITPATVVGQ 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP4 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplC PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT+ TDGY A+Q+ +G VR K L+K ELGHL KS   PMRHL E+R   VD F+ GQ L   ++F+ G +VDV+GT+IG+GF G  KRHNF+RG M HGSK+HR  GS GAGTTPGRVY GK+M G++G     IR+L IV++D +  +V+IKGAVPGKPG L+ + PA  VG+
Sbjct:   37 QIKTKQTDGYAAIQVAFGEVRAKSLSKAELGHLAKSNTAPMRHLHEYRTGEVDQFQVGQVLK-ADLFSAGQVVDVTGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQLGSARTTIRQLTIVRVDPERNLVLIKGAVPGKPGALVSITPANSVGR 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANAVT (50S ribosomal protein L3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplC PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.007e-52
Identity = 98/176 (55.68%), Postives = 132/176 (75.00%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++K++ TDGY A+Q+GYG V+ K L +P LGHL KS    +RHL+E+   S   +  GQ++   +IF+ G+LVDV GT+IG+GF G  KR+NF RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GR+GGT   IRKL ++++D +  +++IKGAVPGKPG+LL + PAK VGK
Sbjct:   37 QVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDSSSDYALGQEIK-ADIFSAGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGSLLSIVPAKKVGK 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNY3 (50S ribosomal protein L3 OS=Synechocystis sp. (strain PCC 6803) GN=rplC PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.927e-52
Identity = 96/176 (54.55%), Postives = 132/176 (75.00%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT+ TDGY+A+Q+G+  V++K L+KPELGHL+KS   PMRHL+E+RL      + G  +   +IF  GDLVDV+G ++G+GF G  KRHNFRRG MTHGSK+HR  GS GAGTTPGRVY GK+M G+ G +   +R+L +V++D +  +++IKGA+PGKPG LL + PAK VG+
Sbjct:   38 QVKTQDTDGYNAIQVGFLPVKEKALSKPELGHLKKSNTDPMRHLKEYRLTDAPNLQPGDAVT-ADIFQAGDLVDVAGQSMGRGFAGYQKRHNFRRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGASQVTVRRLTVVRVDAERNLLIIKGALPGKPGTLLNITPAKTVGR 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GLOVI (50S ribosomal protein L3 OS=Gloeobacter violaceus GN=rplC PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.545e-51
Identity = 98/177 (55.37%), Postives = 132/177 (74.58%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGL-IPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++K+EATDGY AVQ+G+G  R+K LT+PE+GH +K+GL  P+RHL+EFRL     +  GQ++  + +F  G LVDV GT+IGKGF GG KRH+F RG M HGSK+HR  GSIGAGTTPGRV+ GK+MPGRMG     +RKL +V++  +  V++I+G +PG  G LL ++PAK VG+
Sbjct:   37 QVKSEATDGYTAVQLGFGTAREKVLTRPEVGHCKKAGLEAPVRHLREFRLPDSSQYTPGQQITVD-LFAAGQLVDVVGTSIGKGFAGGQKRHHFGRGPMAHGSKNHRAPGSIGAGTTPGRVFPGKRMPGRMGNERVTVRKLTVVRVIPERNVILIQGGLPGVEGGLLMISPAKSVGR 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANASP (50S ribosomal protein L3 OS=Anabaena sp. (strain PCC 7120) GN=rplC PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.545e-51
Identity = 97/176 (55.11%), Postives = 130/176 (73.86%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++K++ TDGY A+Q+GYG V+ K L +P LGHL KS    +RHL+E+       +  GQ++   +IF+ G+LVDV GT+IG+GF G  KR+NF RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GR+GGT   IRKL ++++D +  +++IKGAVPGKPG LL + PAK VGK
Sbjct:   37 QVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDGSSDYALGQEIK-ADIFSVGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGALLSIVPAKKVGK 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_NOSP7 (50S ribosomal protein L3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            ++KT+ TDGY A+Q+G+G V+ K L +P LGHL KS    +RHL E+   S   +  GQ++   +IF+EG +VDV GT+IG+GF G  KR+NF RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GR+GG    IRKL IV++D +  +++IKGA+PGKPG L+ V PAK+VG
Sbjct:   37 QVKTKQTDGYFAIQVGFGEVKPKALNRPLLGHLAKSSAPALRHLNEYHTDSSSDYALGQQIK-ADIFSEGQIVDVVGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGKRITIRKLTIVRVDAERNLLLIKGAIPGKPGALVSVVPAKVVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNS9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9902) GN=rplC PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 98/175 (56.00%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK + TDGY AVQIG+G  R+K + KP  GHL KSG   +RHL+E+R+ +VDG E G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HRQ GSIGAGTTPGR+Y GK+M GR GG     R L I++ID+D  ++++KG+VPGKPG LL + PA  VG
Sbjct:   37 QLKNDDTDGYAAVQIGFGETREKLINKPSKGHLTKSGEDLLRHLREYRVDNVDGLELGGSITVSD-FEAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKTTTRGLTILRIDSDRNLLVVKGSVPGKPGALLNIKPAVRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_THAPS (50S ribosomal protein L3, chloroplastic OS=Thalassiosira pseudonana GN=rpl3 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 95/172 (55.23%), Postives = 127/172 (73.84%), Query Frame = -2
Query:  128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643
            ++KT   DGY+A+Q+GYG V  K LT+P+LGHLQKS + P+++L+EF +     F  GQ L  E  F  G L++V+G +IGKGF G  KR+NF RG MTHGSK+HR  GSIG GT+PGRV  GKKM G++G  T  I+KLKIV+++ND  ++++KGAVPGKPGNLL + P+K
Sbjct:   37 QVKTTLNDGYNAIQVGYGNVSTKALTQPQLGHLQKSNIQPLKYLKEFHVSDPTEFNVGQILNVES-FVAGQLINVTGKSIGKGFSGLQKRYNFARGPMTHGSKNHRAPGSIGMGTSPGRVLPGKKMAGQLGNKTANIKKLKIVQVNNDENILVVKGAVPGKPGNLLSIIPSK 207          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PHATR (50S ribosomal protein L3, chloroplastic OS=Phaeodactylum tricornutum GN=rpl3 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 94/171 (54.97%), Postives = 127/171 (74.27%), Query Frame = -2
Query:  131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643
            ++K ++ DGYD++QIGYG V  K LT+PELGHLQKS + P+++L+EFR+     F+ GQ L  +  F  G LV++ G +IGKGF G  KRHNF RG MTHGSK+HR  GSIG GTTPGRV  GKKM G++G     I+KLKI++I+++  +++IKG+VPGKPGNLL + P+
Sbjct:   37 QVKNQSKDGYDSIQIGYGNVLSKALTQPELGHLQKSNIQPLKYLKEFRINQETEFQIGQVLNVDS-FTPGQLVNIQGKSIGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMSGQLGNKITTIKKLKIIQINSEENILVIKGSVPGKPGNLLSIVPS 206          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SYNE71.033e-5256.8250S ribosomal protein L3 OS=Synechococcus elongatu... [more]
RL3_CYAP41.763e-5256.2550S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_ANAVT3.007e-5255.6850S ribosomal protein L3 OS=Anabaena variabilis (s... [more]
RL3_SYNY33.927e-5254.5550S ribosomal protein L3 OS=Synechocystis sp. (str... [more]
RL3_GLOVI2.545e-5155.3750S ribosomal protein L3 OS=Gloeobacter violaceus ... [more]
RL3_ANASP2.545e-5155.1150S ribosomal protein L3 OS=Anabaena sp. (strain P... [more]
RL3_NOSP73.324e-5155.4350S ribosomal protein L3 OS=Nostoc punctiforme (st... [more]
RL3_SYNS92.814e-5056.0050S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RK3_THAPS2.814e-5055.2350S ribosomal protein L3, chloroplastic OS=Thalass... [more]
RK3_PHATR2.814e-5054.9750S ribosomal protein L3, chloroplastic OS=Phaeoda... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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