DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNE7 (50S ribosomal protein L3 OS=Synechococcus elongatus (strain PCC 7942) GN=rplC PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52 Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT ATDGY+A+QIG+ VR+K+L+KPELGHL K+G P+RHL E+R+ S DG E GQ L + F G VDV G TIG+GF G KRH F RG M+HGSK+HR GS GAGTTPGRVY GK+M GR G IR L +V++D D ++++KG+VPGKPG LL + PA +VG+ Sbjct: 37 QIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKPGALLNITPATVVGQ 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP4 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplC PE=3 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52 Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT+ TDGY A+Q+ +G VR K L+K ELGHL KS PMRHL E+R VD F+ GQ L ++F+ G +VDV+GT+IG+GF G KRHNF+RG M HGSK+HR GS GAGTTPGRVY GK+M G++G IR+L IV++D + +V+IKGAVPGKPG L+ + PA VG+ Sbjct: 37 QIKTKQTDGYAAIQVAFGEVRAKSLSKAELGHLAKSNTAPMRHLHEYRTGEVDQFQVGQVLK-ADLFSAGQVVDVTGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQLGSARTTIRQLTIVRVDPERNLVLIKGAVPGKPGALVSITPANSVGR 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANAVT (50S ribosomal protein L3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplC PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.007e-52 Identity = 98/176 (55.68%), Postives = 132/176 (75.00%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++K++ TDGY A+Q+GYG V+ K L +P LGHL KS +RHL+E+ S + GQ++ +IF+ G+LVDV GT+IG+GF G KR+NF RG M+HGSK+HR GSIGAGTTPGRVY GK+M GR+GGT IRKL ++++D + +++IKGAVPGKPG+LL + PAK VGK Sbjct: 37 QVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDSSSDYALGQEIK-ADIFSAGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGSLLSIVPAKKVGK 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNY3 (50S ribosomal protein L3 OS=Synechocystis sp. (strain PCC 6803) GN=rplC PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 3.927e-52 Identity = 96/176 (54.55%), Postives = 132/176 (75.00%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT+ TDGY+A+Q+G+ V++K L+KPELGHL+KS PMRHL+E+RL + G + +IF GDLVDV+G ++G+GF G KRHNFRRG MTHGSK+HR GS GAGTTPGRVY GK+M G+ G + +R+L +V++D + +++IKGA+PGKPG LL + PAK VG+ Sbjct: 38 QVKTQDTDGYNAIQVGFLPVKEKALSKPELGHLKKSNTDPMRHLKEYRLTDAPNLQPGDAVT-ADIFQAGDLVDVAGQSMGRGFAGYQKRHNFRRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGASQVTVRRLTVVRVDAERNLLIIKGALPGKPGTLLNITPAKTVGR 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_GLOVI (50S ribosomal protein L3 OS=Gloeobacter violaceus GN=rplC PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.545e-51 Identity = 98/177 (55.37%), Postives = 132/177 (74.58%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGL-IPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++K+EATDGY AVQ+G+G R+K LT+PE+GH +K+GL P+RHL+EFRL + GQ++ + +F G LVDV GT+IGKGF GG KRH+F RG M HGSK+HR GSIGAGTTPGRV+ GK+MPGRMG +RKL +V++ + V++I+G +PG G LL ++PAK VG+ Sbjct: 37 QVKSEATDGYTAVQLGFGTAREKVLTRPEVGHCKKAGLEAPVRHLREFRLPDSSQYTPGQQITVD-LFAAGQLVDVVGTSIGKGFAGGQKRHHFGRGPMAHGSKNHRAPGSIGAGTTPGRVFPGKRMPGRMGNERVTVRKLTVVRVIPERNVILIQGGLPGVEGGLLMISPAKSVGR 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ANASP (50S ribosomal protein L3 OS=Anabaena sp. (strain PCC 7120) GN=rplC PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.545e-51 Identity = 97/176 (55.11%), Postives = 130/176 (73.86%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++K++ TDGY A+Q+GYG V+ K L +P LGHL KS +RHL+E+ + GQ++ +IF+ G+LVDV GT+IG+GF G KR+NF RG M+HGSK+HR GSIGAGTTPGRVY GK+M GR+GGT IRKL ++++D + +++IKGAVPGKPG LL + PAK VGK Sbjct: 37 QVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDGSSDYALGQEIK-ADIFSVGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGALLSIVPAKKVGK 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_NOSP7 (50S ribosomal protein L3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplC PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51 Identity = 97/175 (55.43%), Postives = 129/175 (73.71%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 ++KT+ TDGY A+Q+G+G V+ K L +P LGHL KS +RHL E+ S + GQ++ +IF+EG +VDV GT+IG+GF G KR+NF RG M+HGSK+HR GSIGAGTTPGRVY GK+M GR+GG IRKL IV++D + +++IKGA+PGKPG L+ V PAK+VG Sbjct: 37 QVKTKQTDGYFAIQVGFGEVKPKALNRPLLGHLAKSSAPALRHLNEYHTDSSSDYALGQQIK-ADIFSEGQIVDVVGTSIGRGFAGNQKRNNFGRGPMSHGSKNHRAPGSIGAGTTPGRVYPGKRMAGRLGGKRITIRKLTIVRVDAERNLLLIKGAIPGKPGALVSVVPAKVVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNS9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9902) GN=rplC PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50 Identity = 98/175 (56.00%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK + TDGY AVQIG+G R+K + KP GHL KSG +RHL+E+R+ +VDG E G + + F G VDVSG T+G+GF G KRH F RG MTHGSK+HRQ GSIGAGTTPGR+Y GK+M GR GG R L I++ID+D ++++KG+VPGKPG LL + PA VG Sbjct: 37 QLKNDDTDGYAAVQIGFGETREKLINKPSKGHLTKSGEDLLRHLREYRVDNVDGLELGGSITVSD-FEAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKTTTRGLTILRIDSDRNLLVVKGSVPGKPGALLNIKPAVRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_THAPS (50S ribosomal protein L3, chloroplastic OS=Thalassiosira pseudonana GN=rpl3 PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50 Identity = 95/172 (55.23%), Postives = 127/172 (73.84%), Query Frame = -2 Query: 128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643 ++KT DGY+A+Q+GYG V K LT+P+LGHLQKS + P+++L+EF + F GQ L E F G L++V+G +IGKGF G KR+NF RG MTHGSK+HR GSIG GT+PGRV GKKM G++G T I+KLKIV+++ND ++++KGAVPGKPGNLL + P+K Sbjct: 37 QVKTTLNDGYNAIQVGYGNVSTKALTQPQLGHLQKSNIQPLKYLKEFHVSDPTEFNVGQILNVES-FVAGQLINVTGKSIGKGFSGLQKRYNFARGPMTHGSKNHRAPGSIGMGTSPGRVLPGKKMAGQLGNKTANIKKLKIVQVNNDENILVVKGAVPGKPGNLLSIIPSK 207
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PHATR (50S ribosomal protein L3, chloroplastic OS=Phaeodactylum tricornutum GN=rpl3 PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50 Identity = 94/171 (54.97%), Postives = 127/171 (74.27%), Query Frame = -2 Query: 131 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 643 ++K ++ DGYD++QIGYG V K LT+PELGHLQKS + P+++L+EFR+ F+ GQ L + F G LV++ G +IGKGF G KRHNF RG MTHGSK+HR GSIG GTTPGRV GKKM G++G I+KLKI++I+++ +++IKG+VPGKPGNLL + P+ Sbjct: 37 QVKNQSKDGYDSIQIGYGNVLSKALTQPELGHLQKSNIQPLKYLKEFRINQETEFQIGQVLNVDS-FTPGQLVNIQGKSIGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMSGQLGNKITTIKKLKIIQINSEENILVIKGSVPGKPGNLLSIVPS 206 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |