DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOCE (50S ribosomal protein L3 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplC PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 8.188e-50 Identity = 90/174 (51.72%), Postives = 125/174 (71.84%), Query Frame = -2 Query: 116 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 637 KT TDGYDA+++GY +V +KKL+KP LG K+ L PM+HL+EFRL+ + GFE GQ++ E +F GD +DVSG + GKGFQG KR+ R G THGS HR++GS+G+GT PGRV+KGKK+PG MG T ++ L++V++D+D +++IKGA+PG G LL + GK Sbjct: 39 KTVETDGYDAIKVGYVKVAEKKLSKPNLGQFSKTKLAPMKHLKEFRLEDISGFEVGQEIKAENMFQSGDKIDVSGVSKGKGFQGVTKRYGQRTGPNTHGSMYHRRIGSMGSGTNPGRVFKGKKLPGHMGRETITVQNLEVVRVDSDRNLILIKGAIPGPKGGLLVIKNTVKSGK 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNPW (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH7803) GN=rplC PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.069e-49 Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LKT TDGY AVQIG+G RDK + KP GHL KSG +RHL E+R+ V+G E G + + F G VDVSG T+G+GF G KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R L I+K+D+D ++++KG+VPGKPG LL + PA VG Sbjct: 37 QLKTTETDGYSAVQIGFGETRDKLVNKPAKGHLAKSGEGVLRHLSEYRVDDVNGLELGGAVTVSD-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKTTTRGLTILKVDSDRNLLVVKGSVPGKPGALLNIRPANRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMA (50S ribosomal protein L3 OS=Prochlorococcus marinus GN=rplC PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49 Identity = 96/180 (53.33%), Postives = 129/180 (71.67%), Query Frame = -2 Query: 104 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPK 643 +LK+ ATDGY AVQI +G VR+K + KP GHL KSG +R++ E+R++ V F+ G ++ + F EG VDVSGT++G+GF G KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R L I+K+D+D +++IKG++PGKPG+LL + PAK VG N K Sbjct: 37 QLKSSATDGYSAVQIAFGAVREKLINKPFQGHLAKSGDDLLRYMSEYRVKDVGEFQLGAQITVGD-FEEGQKVDVSGTSMGRGFSGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLMIMKVDSDKNLLVIKGSLPGKPGSLLNIRPAKCVGLNSSK 215
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM1 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL1A) GN=rplC PE=3 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.111e-49 Identity = 97/178 (54.49%), Postives = 129/178 (72.47%), Query Frame = -2 Query: 110 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNI 643 +LK+ TDGY AVQIG+ +R+K + KP GHL KSG +RHL+E+R+++ FE G + ++ F +G VDVSG T+G+GF G KRH F RG M+HGSK+HR GSIGAGTTPGRVY GK+M GRMGG R L+I+KID + ++++KG+VPGKPG+LL + PAK VG +I Sbjct: 37 QLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSLLNIRPAKRVGVSI 213
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNJA (50S ribosomal protein L3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplC PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49 Identity = 94/176 (53.41%), Postives = 133/176 (75.57%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 ++KT+ATDGY+AVQ+GY +K LT+ + GHL K+G+ + RHL+EFR+ + ++ GQK+ E IF+ G L+DV+GT+IG+GF G KRH+F RG M+HGSK+HR+ GS+GAGTTPGRV+ G +M GRMGG IRKL++V++D + +++IKG+VPG G LL + PAK VG Sbjct: 37 QIKTQATDGYNAVQLGYWPTAEKHLTRAQRGHLSKAGVTELLRHLREFRVDQPEAYQLGQKITVE-IFSPGQLLDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSVGAGTTPGRVFPGLRMAGRMGGCRVTIRKLQLVQVDPERNLLIIKGSVPGVEGGLLEITPAKQVG 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNR3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain RCC307) GN=rplC PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49 Identity = 92/175 (52.57%), Postives = 125/175 (71.43%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 ++KT DGY AVQ+G+G VR+K + +P GHL+KSG +RHL+E+R+ S DG E G + + F G VDVSG T+G+GF G KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GGT ++ L ++K+D++ ++++KG+VPGKPG LL + PA VG Sbjct: 37 QVKTPTNDGYSAVQVGFGDVREKLVNQPAKGHLKKSGEDLLRHLKEYRVDSTDGVELGSSVTVDA-FEPGQKVDVSGDTMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGTKTTVKGLVVLKVDSERNLLVVKGSVPGKPGALLSIRPAVRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNPX (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH8102) GN=rplC PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49 Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK+ TDGY AVQIG+G R+K + KP GHL K+G +RHL+E+R+ +DGFE G + + F G VDVSG TIG+GF G KRH F RG MTHGSK+HR+ GSIG GTTPGR+Y GK+M GR GG R L I+K+D++ ++++KG+VPGKPG LL + PA VG Sbjct: 37 QLKSSDTDGYAAVQIGFGDTREKLINKPAKGHLNKTGETLLRHLREYRVDGLDGFELGGSITVGD-FEAGQKVDVSGDTIGRGFSGYQKRHGFSRGPMTHGSKNHREPGSIGPGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSERNLLVVKGSVPGKPGALLNIRPALRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_BIGNA (50S ribosomal protein L3, chloroplastic OS=Bigelowiella natans GN=RPL3 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49 Identity = 91/178 (51.12%), Postives = 128/178 (71.91%), Query Frame = -2 Query: 113 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIP-MRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKN 643 ++KT+ TDGYDAVQ+ Y RD+ + PE HL+K G + M+HL+EF++ V F GQ+L EE+F GDLVDVSGT+ GKGFQG I+R +RG M+HGSKSHRQ GSIG TP RVYKG KM GRMG + ++KL ++ ++++ + ++++G+VPGK G ++ + P KIVGK+ Sbjct: 124 QVKTKETDGYDAVQLAYKETRDRTIPWPERQHLRKHGNVKAMKHLKEFKIADVSEFTPGQQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHGSKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPVMMVNDEEKYIVVRGSVPGKKGTIVELRPTKIVGKH 301
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TRIEI (50S ribosomal protein L3 OS=Trichodesmium erythraeum (strain IMS101) GN=rplC PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49 Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKK--------------LTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KTE TDGY AVQIGYG ++K LT + GHL KSG P+R+L+E+R+ + FE GQ++ + +F G LVDV+G +IGKGF G KRHNFRRG M HGSK+HR GS G GTTPGRVY GKKM G +G RKLKIV+ID + +++IKG++PGK G L+ +APA IVG+ Sbjct: 38 QIKTEQTDGYTAVQIGYGEAKNKTRQLNTKEPKEVNRYLTNAQEGHLVKSGGTPLRYLREYRVDNTGNFELGQQIKVD-LFEAGQLVDVTGKSIGKGFAGYQKRHNFRRGPMAHGSKNHRLPGSTGPGTTPGRVYPGKKMAGHLGNVRVTTRKLKIVRIDPERNLLLIKGSIPGKSGTLISIAPANIVGQ 226
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNS3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9311) GN=rplC PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49 Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK+ TDGY AVQIG+G +R+K + KP GHL KSG +RHL E+R+ +DG + G + + F G VDVSG T+G+GF G KRH F RG MTHGSK+HRQ GSIGAGTTPGR+Y GK+M GR GG R L I+KID++ ++++KG+VPGKPG+LL + PA VG Sbjct: 37 QLKSSETDGYQAVQIGFGEIREKLINKPAKGHLAKSGEDLVRHLCEYRVDDLDGIQLGGAVTVGD-FAAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKITTRGLTILKIDSERNLLVVKGSVPGKPGSLLNIRPANRVG 210 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |