DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CLOCE (50S ribosomal protein L3 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.188e-50
Identity = 90/174 (51.72%), Postives = 125/174 (71.84%), Query Frame = -2
Query:  116 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 637
            KT  TDGYDA+++GY +V +KKL+KP LG   K+ L PM+HL+EFRL+ + GFE GQ++  E +F  GD +DVSG + GKGFQG  KR+  R G  THGS  HR++GS+G+GT PGRV+KGKK+PG MG  T  ++ L++V++D+D  +++IKGA+PG  G LL +      GK
Sbjct:   39 KTVETDGYDAIKVGYVKVAEKKLSKPNLGQFSKTKLAPMKHLKEFRLEDISGFEVGQEIKAENMFQSGDKIDVSGVSKGKGFQGVTKRYGQRTGPNTHGSMYHRRIGSMGSGTNPGRVFKGKKLPGHMGRETITVQNLEVVRVDSDRNLILIKGAIPGPKGGLLVIKNTVKSGK 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNPW (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH7803) GN=rplC PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.069e-49
Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LKT  TDGY AVQIG+G  RDK + KP  GHL KSG   +RHL E+R+  V+G E G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG     R L I+K+D+D  ++++KG+VPGKPG LL + PA  VG
Sbjct:   37 QLKTTETDGYSAVQIGFGETRDKLVNKPAKGHLAKSGEGVLRHLSEYRVDDVNGLELGGAVTVSD-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKTTTRGLTILKVDSDRNLLVVKGSVPGKPGALLNIRPANRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMA (50S ribosomal protein L3 OS=Prochlorococcus marinus GN=rplC PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.824e-49
Identity = 96/180 (53.33%), Postives = 129/180 (71.67%), Query Frame = -2
Query:  104 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPK 643
            +LK+ ATDGY AVQI +G VR+K + KP  GHL KSG   +R++ E+R++ V  F+ G ++   + F EG  VDVSGT++G+GF G  KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG     R L I+K+D+D  +++IKG++PGKPG+LL + PAK VG N  K
Sbjct:   37 QLKSSATDGYSAVQIAFGAVREKLINKPFQGHLAKSGDDLLRYMSEYRVKDVGEFQLGAQITVGD-FEEGQKVDVSGTSMGRGFSGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLMIMKVDSDKNLLVIKGSLPGKPGSLLNIRPAKCVGLNSSK 215          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM1 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL1A) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.111e-49
Identity = 97/178 (54.49%), Postives = 129/178 (72.47%), Query Frame = -2
Query:  110 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNI 643
            +LK+  TDGY AVQIG+  +R+K + KP  GHL KSG   +RHL+E+R+++   FE G  +  ++ F +G  VDVSG T+G+GF G  KRH F RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GRMGG     R L+I+KID +  ++++KG+VPGKPG+LL + PAK VG +I
Sbjct:   37 QLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSLLNIRPAKRVGVSI 213          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNJA (50S ribosomal protein L3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 94/176 (53.41%), Postives = 133/176 (75.57%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            ++KT+ATDGY+AVQ+GY    +K LT+ + GHL K+G+  + RHL+EFR+   + ++ GQK+  E IF+ G L+DV+GT+IG+GF G  KRH+F RG M+HGSK+HR+ GS+GAGTTPGRV+ G +M GRMGG    IRKL++V++D +  +++IKG+VPG  G LL + PAK VG
Sbjct:   37 QIKTQATDGYNAVQLGYWPTAEKHLTRAQRGHLSKAGVTELLRHLREFRVDQPEAYQLGQKITVE-IFSPGQLLDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSVGAGTTPGRVFPGLRMAGRMGGCRVTIRKLQLVQVDPERNLLIIKGSVPGVEGGLLEITPAKQVG 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNR3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain RCC307) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49
Identity = 92/175 (52.57%), Postives = 125/175 (71.43%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            ++KT   DGY AVQ+G+G VR+K + +P  GHL+KSG   +RHL+E+R+ S DG E G  +  +  F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GGT   ++ L ++K+D++  ++++KG+VPGKPG LL + PA  VG
Sbjct:   37 QVKTPTNDGYSAVQVGFGDVREKLVNQPAKGHLKKSGEDLLRHLKEYRVDSTDGVELGSSVTVDA-FEPGQKVDVSGDTMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGTKTTVKGLVVLKVDSERNLLVVKGSVPGKPGALLSIRPAVRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNPX (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH8102) GN=rplC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49
Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK+  TDGY AVQIG+G  R+K + KP  GHL K+G   +RHL+E+R+  +DGFE G  +   + F  G  VDVSG TIG+GF G  KRH F RG MTHGSK+HR+ GSIG GTTPGR+Y GK+M GR GG     R L I+K+D++  ++++KG+VPGKPG LL + PA  VG
Sbjct:   37 QLKSSDTDGYAAVQIGFGDTREKLINKPAKGHLNKTGETLLRHLREYRVDGLDGFELGGSITVGD-FEAGQKVDVSGDTIGRGFSGYQKRHGFSRGPMTHGSKNHREPGSIGPGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSERNLLVVKGSVPGKPGALLNIRPALRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_BIGNA (50S ribosomal protein L3, chloroplastic OS=Bigelowiella natans GN=RPL3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49
Identity = 91/178 (51.12%), Postives = 128/178 (71.91%), Query Frame = -2
Query:  113 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIP-MRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKN 643
            ++KT+ TDGYDAVQ+ Y   RD+ +  PE  HL+K G +  M+HL+EF++  V  F  GQ+L  EE+F  GDLVDVSGT+ GKGFQG I+R   +RG M+HGSKSHRQ GSIG   TP RVYKG KM GRMG   + ++KL ++ ++++ + ++++G+VPGK G ++ + P KIVGK+
Sbjct:  124 QVKTKETDGYDAVQLAYKETRDRTIPWPERQHLRKHGNVKAMKHLKEFKIADVSEFTPGQQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHGSKSHRQHGSIGCSATPSRVYKGLKMAGRMGNERKTVKKLPVMMVNDEEKYIVVRGSVPGKKGTIVELRPTKIVGKH 301          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_TRIEI (50S ribosomal protein L3 OS=Trichodesmium erythraeum (strain IMS101) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKK--------------LTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KTE TDGY AVQIGYG  ++K               LT  + GHL KSG  P+R+L+E+R+ +   FE GQ++  + +F  G LVDV+G +IGKGF G  KRHNFRRG M HGSK+HR  GS G GTTPGRVY GKKM G +G      RKLKIV+ID +  +++IKG++PGK G L+ +APA IVG+
Sbjct:   38 QIKTEQTDGYTAVQIGYGEAKNKTRQLNTKEPKEVNRYLTNAQEGHLVKSGGTPLRYLREYRVDNTGNFELGQQIKVD-LFEAGQLVDVTGKSIGKGFAGYQKRHNFRRGPMAHGSKNHRLPGSTGPGTTPGRVYPGKKMAGHLGNVRVTTRKLKIVRIDPERNLLLIKGSIPGKSGTLISIAPANIVGQ 226          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNS3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9311) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK+  TDGY AVQIG+G +R+K + KP  GHL KSG   +RHL E+R+  +DG + G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HRQ GSIGAGTTPGR+Y GK+M GR GG     R L I+KID++  ++++KG+VPGKPG+LL + PA  VG
Sbjct:   37 QLKSSETDGYQAVQIGFGEIREKLINKPAKGHLAKSGEDLVRHLCEYRVDDLDGIQLGGAVTVGD-FAAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKITTRGLTILKIDSERNLLVVKGSVPGKPGSLLNIRPANRVG 210          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_CLOCE8.188e-5051.7250S ribosomal protein L3 OS=Clostridium cellulolyt... [more]
RL3_SYNPW1.069e-4955.4350S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_PROMA1.824e-4953.3350S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROM13.111e-4954.4950S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_SYNJA4.064e-4953.4150S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNR35.307e-4952.5750S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNPX5.307e-4954.2950S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RK3_BIGNA5.307e-4951.1250S ribosomal protein L3, chloroplastic OS=Bigelow... [more]
RL3_TRIEI6.932e-4952.1150S ribosomal protein L3 OS=Trichodesmium erythrae... [more]
RL3_SYNS36.932e-4954.8650S ribosomal protein L3 OS=Synechococcus sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
back to top