DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMM (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LKT   DGY AVQIG+G  R+K + KP  GHL KSG + ++HL+E+R++ ++G E G  +     F  G  VDVSG T+G+GF G  KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG  R  R L I+K+D++  ++++KG+VPGKPG LL + PAK VG
Sbjct:   37 QLKTSEIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKPGALLNIRPAKRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM3 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LKT   DGY AVQIG+G  R+K + KP  GHL KSG + ++HL+E+R++ ++G E G  +     F  G  VDVSG T+G+GF G  KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG  R  R L I+K+D++  ++++KG+VPGKPG LL + PAK VG
Sbjct:   37 QLKTSDIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFSGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKPGALLNIRPAKRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNSC (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9605) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK + TDGY AVQIG+G  R+K + KP  GHL KSG   +RHL+E+R+ SV+G E G  +   + F  G  VDVSG T+G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG     R L I+K+D++  ++++KG+VPGKPG LL + PA  VG
Sbjct:   37 QLKNDDTDGYSAVQIGFGETREKLINKPAQGHLNKSGEGLLRHLREYRVDSVEGLELGGAITVGD-FEAGQKVDVSGDTVGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSEHNLLVVKGSVPGKPGALLNIRPALRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMT (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL2A) GN=rplC PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 95/175 (54.29%), Postives = 127/175 (72.57%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK+  TDGY AVQIG+  +R+K + KP  GHL KSG   +RHL+E+R+++   FE G  +  ++ F +G  VD+SG T+G+GF G  KRH F RG M+HGSK+HR  GSIGAGTTPGRVY GK+M GRMGG     R L+I+KID +  ++++KG+VPGKPG+LL + PAK VG
Sbjct:   37 QLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDISGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSLLNIRPAKRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_ODOSI (50S ribosomal protein L3, chloroplastic OS=Odontella sinensis GN=rpl3 PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 89/168 (52.98%), Postives = 127/168 (75.60%), Query Frame = -2
Query:  140 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 643
            ++KT+  DGY+A+QIGYG V +K LT+PELGHLQKS + P+++L+EFR+ + + F+ GQ +  E + + G  +DV+G + GKGF G  KRHNF RG MTHGSK+HR  GSIG GTTPGRV  GKKM G++G    K +KLKI++++ +  ++++KG+VPGKPGNL+ +
Sbjct:   37 QVKTDLNDGYNAIQIGYGTVSNKSLTQPELGHLQKSNIQPLKYLKEFRVNNPEEFKVGQVVNVESL-STGQFIDVTGKSSGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKVTKTKKLKIIQVNGNENILVVKGSVPGKPGNLVTI 203          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM4 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.493e-48
Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LK+ ATDGY AVQIGYG  R+K + KP  GHL KSG   +RHL E+R+  +  +E G K+     F  G  VDVSG ++G+GF G  KRH+F RG M+HGSK+HRQ GS GAGTTPGR+Y GK+M GR GG     R L I+KID+D  ++++KG+VPGKPG+LL + PA+ VG
Sbjct:   37 QLKSLATDGYSAVQIGYGFTREKLVNKPFKGHLSKSGEGFLRHLHEYRVDDLGVYELGAKITVGN-FEAGQKVDVSGNSMGRGFAGYQKRHSFSRGPMSHGSKNHRQPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTIMKIDSDRNLLVVKGSVPGKPGSLLNIRPAQRVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_CYAPA (50S ribosomal protein L3, cyanelle OS=Cyanophora paradoxa GN=rpl3 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47
Identity = 91/174 (52.30%), Postives = 126/174 (72.41%), Query Frame = -2
Query:  122 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIV 643
            ++KT ATDGY+A+Q+GY   ++K LTK +LGHLQK+    +R LQEF ++S D  E  + +  E +FN+ D+V++ G +IG+GF G  KRHNF RG M+HGSK+HR  GSIGAG+TPGRVY G +M GR G +   IR LKIVK+D++  ++++KG+VPGKPG LL +   K V
Sbjct:   37 QIKTTATDGYNAIQVGYRETKEKNLTKAQLGHLQKTNNSALRVLQEFSIESSDSIEVEKPITVE-LFNDNDIVNIQGYSIGRGFSGYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKVDSERSLLIVKGSVPGKPGGLLTITQVKKV 209          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNJB (50S ribosomal protein L3 OS=Synechococcus sp. GN=rplC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47
Identity = 92/176 (52.27%), Postives = 131/176 (74.43%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            ++KT+ATDGY+A+Q+GY    +K LT+ + GHL K+G+  + RHL+EFR+   + ++ GQK+  E +F+ G LVDV+GT+IG+GF G  KRH+F RG M+HGSK+HR+ GSIGAGTTPGRV+ G +M GR+GG     RKL++V++D +  +++IKG VPG  G LL + PAK VG
Sbjct:   37 QIKTQATDGYNAIQLGYLPTAEKHLTRAQRGHLTKAGVTELLRHLREFRVDQPEAYQLGQKITVE-MFSPGQLVDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSIGAGTTPGRVFPGMRMAGRLGGGRVTTRKLQLVQVDPERDLLVIKGCVPGVEGGLLEITPAKQVG 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PAUCH (50S ribosomal protein L3, organellar chromatophore OS=Paulinella chromatophora GN=rpl3 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = -2
Query:  128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643
            +LK+  TDGY AVQ+GYG  R K + KP  GHL +SG   + HL+E+R++++DG + G  +  E+ F  G  VDVSG ++G+GF G  KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG     R L IVK+D    ++++KG+VPGKPG+LL + PAK
Sbjct:   37 QLKSIDTDGYTAVQLGYGETRQKLVNKPSKGHLARSGEQLLSHLREYRVETIDGLKLGNSITVED-FKAGQKVDVSGDSMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKQITTRGLVIVKVDTGHNLLVVKGSVPGKPGSLLNIFPAK 207          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM0 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplC PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            +LKT A DGY AVQIGYG  +DK ++KPE GHL KSG   ++HL+E+R++    +E G ++  +  F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L ++KID+   ++++KG+VPGKPG+++ + P  IVGK
Sbjct:   37 QLKTTALDGYTAVQIGYGLSKDKHISKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGNQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIINIKPNNIVGK 211          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_PROMM6.932e-4953.1450S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROM36.932e-4953.1450S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_SYNSC9.053e-4954.2950S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_PROMT9.053e-4954.2950S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RK3_ODOSI9.053e-4952.9850S ribosomal protein L3, chloroplastic OS=Odontel... [more]
RL3_PROM44.493e-4854.8650S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RK3_CYAPA1.307e-4752.3050S ribosomal protein L3, cyanelle OS=Cyanophora p... [more]
RL3_SYNJB1.707e-4752.2750S ribosomal protein L3 OS=Synechococcus sp. GN=r... [more]
RK3_PAUCH1.707e-4752.9150S ribosomal protein L3, organellar chromatophore... [more]
RL3_PROM02.912e-4750.5750S ribosomal protein L3 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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