DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMM (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplC PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49 Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LKT DGY AVQIG+G R+K + KP GHL KSG + ++HL+E+R++ ++G E G + F G VDVSG T+G+GF G KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R R L I+K+D++ ++++KG+VPGKPG LL + PAK VG Sbjct: 37 QLKTSEIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKPGALLNIRPAKRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM3 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplC PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49 Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LKT DGY AVQIG+G R+K + KP GHL KSG + ++HL+E+R++ ++G E G + F G VDVSG T+G+GF G KRH F RG M+HGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R R L I+K+D++ ++++KG+VPGKPG LL + PAK VG Sbjct: 37 QLKTSDIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFSGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKPGALLNIRPAKRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNSC (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9605) GN=rplC PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49 Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK + TDGY AVQIG+G R+K + KP GHL KSG +RHL+E+R+ SV+G E G + + F G VDVSG T+G+GF G KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R L I+K+D++ ++++KG+VPGKPG LL + PA VG Sbjct: 37 QLKNDDTDGYSAVQIGFGETREKLINKPAQGHLNKSGEGLLRHLREYRVDSVEGLELGGAITVGD-FEAGQKVDVSGDTVGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSEHNLLVVKGSVPGKPGALLNIRPALRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMT (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL2A) GN=rplC PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49 Identity = 95/175 (54.29%), Postives = 127/175 (72.57%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK+ TDGY AVQIG+ +R+K + KP GHL KSG +RHL+E+R+++ FE G + ++ F +G VD+SG T+G+GF G KRH F RG M+HGSK+HR GSIGAGTTPGRVY GK+M GRMGG R L+I+KID + ++++KG+VPGKPG+LL + PAK VG Sbjct: 37 QLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDISGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSLLNIRPAKRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_ODOSI (50S ribosomal protein L3, chloroplastic OS=Odontella sinensis GN=rpl3 PE=3 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49 Identity = 89/168 (52.98%), Postives = 127/168 (75.60%), Query Frame = -2 Query: 140 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 643 ++KT+ DGY+A+QIGYG V +K LT+PELGHLQKS + P+++L+EFR+ + + F+ GQ + E + + G +DV+G + GKGF G KRHNF RG MTHGSK+HR GSIG GTTPGRV GKKM G++G K +KLKI++++ + ++++KG+VPGKPGNL+ + Sbjct: 37 QVKTDLNDGYNAIQIGYGTVSNKSLTQPELGHLQKSNIQPLKYLKEFRVNNPEEFKVGQVVNVESL-STGQFIDVTGKSSGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKVTKTKKLKIIQVNGNENILVVKGSVPGKPGNLVTI 203
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM4 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplC PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 4.493e-48 Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 +LK+ ATDGY AVQIGYG R+K + KP GHL KSG +RHL E+R+ + +E G K+ F G VDVSG ++G+GF G KRH+F RG M+HGSK+HRQ GS GAGTTPGR+Y GK+M GR GG R L I+KID+D ++++KG+VPGKPG+LL + PA+ VG Sbjct: 37 QLKSLATDGYSAVQIGYGFTREKLVNKPFKGHLSKSGEGFLRHLHEYRVDDLGVYELGAKITVGN-FEAGQKVDVSGNSMGRGFAGYQKRHSFSRGPMSHGSKNHRQPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTIMKIDSDRNLLVVKGSVPGKPGSLLNIRPAQRVG 210
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_CYAPA (50S ribosomal protein L3, cyanelle OS=Cyanophora paradoxa GN=rpl3 PE=3 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47 Identity = 91/174 (52.30%), Postives = 126/174 (72.41%), Query Frame = -2 Query: 122 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIV 643 ++KT ATDGY+A+Q+GY ++K LTK +LGHLQK+ +R LQEF ++S D E + + E +FN+ D+V++ G +IG+GF G KRHNF RG M+HGSK+HR GSIGAG+TPGRVY G +M GR G + IR LKIVK+D++ ++++KG+VPGKPG LL + K V Sbjct: 37 QIKTTATDGYNAIQVGYRETKEKNLTKAQLGHLQKTNNSALRVLQEFSIESSDSIEVEKPITVE-LFNDNDIVNIQGYSIGRGFSGYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKVDSERSLLIVKGSVPGKPGGLLTITQVKKV 209
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNJB (50S ribosomal protein L3 OS=Synechococcus sp. GN=rplC PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47 Identity = 92/176 (52.27%), Postives = 131/176 (74.43%), Query Frame = -2 Query: 119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643 ++KT+ATDGY+A+Q+GY +K LT+ + GHL K+G+ + RHL+EFR+ + ++ GQK+ E +F+ G LVDV+GT+IG+GF G KRH+F RG M+HGSK+HR+ GSIGAGTTPGRV+ G +M GR+GG RKL++V++D + +++IKG VPG G LL + PAK VG Sbjct: 37 QIKTQATDGYNAIQLGYLPTAEKHLTRAQRGHLTKAGVTELLRHLREFRVDQPEAYQLGQKITVE-MFSPGQLVDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSIGAGTTPGRVFPGMRMAGRLGGGRVTTRKLQLVQVDPERDLLVIKGCVPGVEGGLLEITPAKQVG 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PAUCH (50S ribosomal protein L3, organellar chromatophore OS=Paulinella chromatophora GN=rpl3 PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47 Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = -2 Query: 128 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 643 +LK+ TDGY AVQ+GYG R K + KP GHL +SG + HL+E+R++++DG + G + E+ F G VDVSG ++G+GF G KRH F RG MTHGSK+HR+ GS GAGTTPGR+Y GK+M GR GG R L IVK+D ++++KG+VPGKPG+LL + PAK Sbjct: 37 QLKSIDTDGYTAVQLGYGETRQKLVNKPSKGHLARSGEQLLSHLREYRVETIDGLKLGNSITVED-FKAGQKVDVSGDSMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKQITTRGLVIVKVDTGHNLLVVKGSVPGKPGSLLNIFPAK 207
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM0 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplC PE=3 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47 Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 +LKT A DGY AVQIGYG +DK ++KPE GHL KSG ++HL+E+R++ +E G ++ + F G VD+SG ++G+GF G KRH F RG M+HGSK+HR GS GAGTTPGR+Y GK+M GR GG + L ++KID+ ++++KG+VPGKPG+++ + P IVGK Sbjct: 37 QLKTTALDGYTAVQIGYGLSKDKHISKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGNQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIINIKPNNIVGK 211 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |