DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_RHDSA (50S ribosomal protein L3, chloroplastic OS=Rhodomonas salina GN=rpl3 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.912e-47
Identity = 87/173 (50.29%), Postives = 126/173 (72.83%), Query Frame = -2
Query:  125 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 643
            ++KT+ +D Y A+QIG+  V++  L KP LGHL+KS    ++HL+E+R++SV+G E  QK+  +  F  G  V VSG TIGKGF G ++R++F RG MTHGSK+HR+ GSIG G+TPG+V+KGKKM GR+GG    I+ L+IV ++ D  ++++KGAVPGK GN+L +   +I
Sbjct:   37 QIKTQESDSYQAIQIGFSEVKESSLNKPLLGHLKKSQAPALKHLKEYRVKSVEGLEVAQKITLDS-FEVGKTVSVSGKTIGKGFAGTVRRYSFTRGPMTHGSKNHREPGSIGQGSTPGKVHKGKKMAGRLGGKQSTIKNLEIVHVNTDNNILVVKGAVPGKKGNILSIQQEEI 208          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMS (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain AS9601) GN=rplC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 88/176 (50.00%), Postives = 125/176 (71.02%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            +LKT A DGY AVQIGYG  ++K L+KPE GHL KSG   ++HL+E+R++    +E G+++  +  F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L ++KID+   ++++KG+VPGKPG+++ + P  +VGK
Sbjct:   37 QLKTTALDGYTAVQIGYGLSKEKHLSKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGKQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIINIKPNNVVGK 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROMP (50S ribosomal protein L3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 88/175 (50.29%), Postives = 124/175 (70.86%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LKT+  DGY A+QIGYG  +DK L+KPE GHL KSG I ++HL+E+R++    +E G+++     F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L +VKID+   ++++KG+VPGKPG+++ + P  +VG
Sbjct:   37 QLKTQPLDGYTAIQIGYGVSKDKHLSKPEKGHLLKSGEILLKHLKEYRVEENSSYEIGKEITVTN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKKITTKGLLVVKIDDQKNLLVVKGSVPGKPGSIVNIKPNNVVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THETN (50S ribosomal protein L3 OS=Thermoanaerobacter tengcongensis GN=rplC PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.107e-46
Identity = 88/164 (53.66%), Postives = 122/164 (74.39%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT   DGY+A+Q+G+G V +KKL KP LGH +K+G+ P R+L+EFRL  + G+E G ++  + IF  GD VDV+G + GKGF G IKR+  RRG M+HGSK HR++GS+GA T PGR +KGKKMPGRMG     I+ L++VK+D +L ++++KG+VPG  G+LL
Sbjct:   39 KTVEKDGYNAIQVGFGDVSEKKLNKPLLGHFKKAGVSPKRYLREFRLDDISGYEVGTEIKVD-IFKPGDRVDVTGISKGKGFAGVIKRYGARRGPMSHGSKYHRRVGSMGATTDPGRTFKGKKMPGRMGSDRVTIQNLEVVKVDPELNLLVVKGSVPGPKGSLL 201          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM9 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplC PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 88/176 (50.00%), Postives = 122/176 (69.32%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            +LKT   DGY AVQIGYG  +DK + KPE GHL KSG   ++HL+E+R++    +E G ++  +  F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L ++KID+   +++IKG+VPGKPG+++ + P  +VGK
Sbjct:   37 QLKTTTLDGYSAVQIGYGLSKDKHINKPEKGHLLKSGEELLKHLKEYRVEETTSYEIGNQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVIKGSVPGKPGSIVNIKPNNVVGK 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM2 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplC PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 86/176 (48.86%), Postives = 124/176 (70.45%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            +LKT A DGY A+QIGYG  ++K ++KPE GHL KSG   ++HL+E+R++    +E G ++  +  F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L ++KID+   ++++KG+VPGKPG+++ + P  +VGK
Sbjct:   37 QLKTNALDGYTAIQIGYGVSKEKHISKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGNQITVKN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSIVNIKPNNVVGK 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_PROM5 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.205e-46
Identity = 87/175 (49.71%), Postives = 123/175 (70.29%), Query Frame = -2
Query:  119 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 643
            +LKT++ DGY A+QIGYG  +DK L+KPE GHL KSG   ++HL+EF+++    +E G+++     F  G  VD+SG ++G+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGR+Y GK+M GR GG     + L +VKID+   ++++KG+VPGKPG+++ + P   VG
Sbjct:   37 QLKTQSLDGYTAIQIGYGVSKDKHLSKPEKGHLLKSGKELLKHLKEFKVEENSSYEIGKEITVTN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKKITTKGLLVVKIDDQKNLLVVKGSVPGKPGSIVNIRPNNTVG 210          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_GUITH (50S ribosomal protein L3, chloroplastic OS=Guillardia theta GN=rpl3 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.492e-46
Identity = 88/167 (52.69%), Postives = 120/167 (71.86%), Query Frame = -2
Query:  140 LKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRV 640
            LK++  D Y+A+QIGY +V  KKLTKP+LGHLQ + L P++HL+E+++ +   F   Q+L    IF  G +V VSG +IGKGF G +KRHNF RG MTHGSK+HR+ GSIG G+TP +V+KGKKM GR+GG     + L +V +D D  V+++KG VPGK GN+L +
Sbjct:   38 LKSDTKDNYNAIQIGYQQVDAKKLTKPQLGHLQVNNLPPLKHLKEYKVDATHTFTIAQQLDVS-IFELGQIVSVSGVSIGKGFAGTVKRHNFTRGPMTHGSKNHREPGSIGQGSTPAKVHKGKKMAGRLGGHQVTTKNLTVVHLDKDNNVLVLKGCVPGKRGNILSI 203          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_PORYE (50S ribosomal protein L3, chloroplastic OS=Porphyra yezoensis GN=rpl3 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 85/169 (50.30%), Postives = 127/169 (75.15%), Query Frame = -2
Query:  137 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 643
            ++K  +TDGY+A+Q+GY +V ++KL KP LGHL+KS   P+++L+E+ ++S D FE  Q L+  ++F  G  ++VS  ++GKGF G  KRH+F RG M+HGSK+HRQ GSIGAGTTPGRVY GK M G++G     I+ L+IV I+++  ++++KGAVPGKPG L++++
Sbjct:   37 QIKAVSTDGYNAIQVGYKQVAEQKLNKPLLGHLKKSQAPPLKYLREYEMKSTDDFEVSQILS-TDLFQVGQKINVSSRSVGKGFSGYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQLGNKKVTIKNLQIVSINSENDLLIVKGAVPGKPGALVKIS 204          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEP3 (50S ribosomal protein L3 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplC PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.936e-44
Identity = 83/164 (50.61%), Postives = 121/164 (73.78%), Query Frame = -2
Query:  146 KTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLL 637
            KT  TDGY+A+Q+G+G V++K+LTKP +GH +K+G+   R+L+EFRL  + G+E G ++  + IF  GD VDV+G + GKGF G +KR+   RG M+HGSK HR++GS+GA T PGR +KGK MPG MG     I+ L++VK+D +L ++++KG+VPG  G+LL
Sbjct:   39 KTVETDGYNAIQVGFGDVKEKRLTKPLIGHFKKAGVPFKRYLREFRLDDISGYEVGSEIKVD-IFKPGDRVDVTGISKGKGFAGVVKRYGANRGPMSHGSKYHRRVGSMGATTDPGRTFKGKIMPGHMGHERVTIQNLEVVKVDPELNLLLVKGSVPGPKGSLL 201          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3_RHDSA2.912e-4750.2950S ribosomal protein L3, chloroplastic OS=Rhodomo... [more]
RL3_PROMS4.968e-4750.0050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROMP4.968e-4750.2950S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_THETN1.107e-4653.6650S ribosomal protein L3 OS=Thermoanaerobacter ten... [more]
RL3_PROM91.445e-4650.0050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROM21.445e-4648.8650S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROM54.205e-4649.7150S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RK3_GUITH5.492e-4652.6950S ribosomal protein L3, chloroplastic OS=Guillar... [more]
RK3_PORYE2.726e-4550.3050S ribosomal protein L3, chloroplastic OS=Porphyr... [more]
RL3_THEP33.936e-4450.6150S ribosomal protein L3 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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